Locus 8228

Sequence ID X_DroMel_CAF1
Location 20,431,747 – 20,431,841
Length 94
Max. P 0.978384
window13517

overview

Window 7

Location 20,431,747 – 20,431,841
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 94.42
Mean single sequence MFE -20.80
Consensus MFE -18.20
Energy contribution -18.73
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -2.21
Structure conservation index 0.88
SVM decision value 1.81
SVM RNA-class probability 0.978384
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20431747 94 - 22224390
GAGGGAC-GGGCGUGGGCGGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACACGCAGACA
.......-..(((((.....(((((....(((((((((......)))))))))............((......)).)))))....)))))..... ( -21.70)
>DroPse_CAF1 21232 94 - 1
GAGAAAG-GUCGGUGGGCUGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACACGCAGACA
.......-(((.((((....(((((....(((((((((......)))))))))............((......)).)))))....).))).))). ( -19.80)
>DroSim_CAF1 7636 95 - 1
GAGGGAAGGGGCGUGGGAGGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACACGCAGACA
.......(..(((((.....(((((....(((((((((......)))))))))............((......)).)))))....)))))...). ( -21.80)
>DroEre_CAF1 4039 94 - 1
GAGGGGC-GGGCGUGGGCGGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACACGCAGACA
.......-..(((((.....(((((....(((((((((......)))))))))............((......)).)))))....)))))..... ( -21.70)
>DroYak_CAF1 3503 94 - 1
GAGGGAG-GGGCGUGGGCGGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACAUGCAGACA
......(-..(((((.....(((((....(((((((((......)))))))))............((......)).)))))....)))))...). ( -20.00)
>DroPer_CAF1 21977 94 - 1
GAGAAAG-GUCGGUGGGCUGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACACGCAGACA
.......-(((.((((....(((((....(((((((((......)))))))))............((......)).)))))....).))).))). ( -19.80)
>consensus
GAGGGAG_GGGCGUGGGCGGUAUUUGAAAGUGGUCAACCAACUCGUUGACCGCAAAAGAGAAAAAAUAAUAAAAUGAAAUAAACACACGCAGACA
..........(((((.....(((((....(((((((((......)))))))))............((......)).)))))....)))))..... (-18.20 = -18.73 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:52 2006