| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,431,272 – 20,431,392 |
| Length | 120 |
| Max. P | 0.552265 |
| Location | 20,431,272 – 20,431,392 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.42 |
| Mean single sequence MFE | -30.60 |
| Consensus MFE | -22.94 |
| Energy contribution | -24.82 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20431272 120 - 22224390 CUGGAAUUAUUGACAGUUUGACAAACUGGGAGACUAAAUUGAACAUUCCUCGUGGUUUGCUGAUGGAAAACGAUUCACCAAGCCCGCCUAAGGGAAUUUCGGUAAUUCGAGAAAUAAUCA ((.((((((((((..(((..(.....(((....)))..)..)))((((((((.((((((.(((...........))).)))))))).....)))))).)))))))))).))......... ( -32.20) >DroSec_CAF1 4989 120 - 1 CUUGAAUUAUUGACAGUUUGACAAACUGGGAGACUAAAUUGAACAUUCCUCGCGGUUUGCUGAUGGAAAACGAUUCACCAAGCGCGCCUAAGGGAAUUUCGGUAAUUUGAGAAAUUAUAA ((..(((((((((..(((..(.....(((....)))..)..)))((((((...(((.((((..((((......))))...)))).)))...)))))).)))))))))..))......... ( -32.50) >DroSim_CAF1 7165 120 - 1 CUGGAAUUAUUGACAGUUUGACAAACUGGGAGACUAAAUUGAACAUUCCUCGCGGUUUGCUGAUGGAAAACGAUUCAGCAAGCGCGCCUAAGGGAAUUUCGGUAAUUUGAGAAAUAAUAA ((.((((((((((..(((..(.....(((....)))..)..)))((((((.((((((((((((...........))))))))).)))....)))))).)))))))))).))......... ( -37.70) >DroEre_CAF1 3559 120 - 1 CUGGAAUUAUUGACAGUUUGACAAACUGCGCGACUAAAUUGAACAUUCCUCGUGGUUUGCUGAUGGAAAACCAUUCACCAAGCGCGCCUAAGGGAAUUUAGGUAAUUUGAGAAAUAAUAA ((.(((((((.(.(((((.....))))))....((((((......(((((.((((((((.((((((....))).))).))))).)))...)))))))))))))))))).))......... ( -27.80) >DroYak_CAF1 3010 120 - 1 CUGGCAUUAUUGACAGUUUGACAAACUGGGAGAUUAAAUUAAACAUUCCUCAUGUCUGGCUGAUGGCAAACUAUUCGCCAAGCGCACCUAAGGGAAUUUACGCUAUUUGAGAAAUAAUAA .((((........((((..((((....((((..((......))..))))...))))..))))((((....))))..))))((((..((....))......))))................ ( -22.80) >consensus CUGGAAUUAUUGACAGUUUGACAAACUGGGAGACUAAAUUGAACAUUCCUCGUGGUUUGCUGAUGGAAAACGAUUCACCAAGCGCGCCUAAGGGAAUUUCGGUAAUUUGAGAAAUAAUAA ((.(((((((((((((((.....)))))................((((((...(((.((((..((((......))))...)))).)))...)))))).)))))))))).))......... (-22.94 = -24.82 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:51 2006