Locus 8225

Sequence ID X_DroMel_CAF1
Location 20,426,218 – 20,426,313
Length 95
Max. P 0.826455
window13513

overview

Window 3

Location 20,426,218 – 20,426,313
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.73
Mean single sequence MFE -22.67
Consensus MFE -15.29
Energy contribution -15.10
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -2.04
Structure conservation index 0.67
SVM decision value 0.70
SVM RNA-class probability 0.826455
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20426218 95 + 22224390
CCAAUCAACAGCUCUUUCGGUCAAAACCGAAAAAAA--AAAAAACAAAGGAAGCUCUGGCUUAAACAACUCGCUAUAAUUUGUAGACCCAAACCGGG-----------------------
.(((.....(((..(((((((....)))))))....--..........(.((((....))))...).....))).....)))....(((.....)))----------------------- ( -16.50)
>DroSec_CAF1 15458 116 + 1
ACAAUCAACAGCUCUUUCGGCCAAAACCGAAAAAA----AAAACCAAAGGAAACUCUGGCUUAAACAACUCGGUAUAAUUUGUAGACCCAAACCGGGGAAAAUGGCGAAAAAGAAGGUGA
....(((....((.(((((.(((..(((((.....----....(((.((....)).)))..........)))))............(((.....))).....)))))))).))....))) ( -27.81)
>DroEre_CAF1 14728 115 + 1
CCAAUCAACAGCUCUUUUGGCGAAAACCGAAAA-----AGAAAACAAAGGAAACUCUGGCUUAAACAACUCGCUAUAAUUUGUAGACCCAAACCGGGGAAAAUGGCGAAAAAGAAGGUGA
((.......(((((((((..((.....)).)))-----)))...((.((....)).)))))........(((((((..........(((.....)))....))))))).......))... ( -21.84)
>DroYak_CAF1 11791 120 + 1
CCAAUCAACAGCUCUUUCGGCCAAAACCGAAAAAAGAAAGAAAGCAAAGGAAACUCUGGCUUAAACAACUCGCUAUAAUUUGUAGACCCAAACCGGGGAAAAUGGCGAAAAAGAAGGUGA
........((.(((((((((......)))))).........((((..((....))...)))).......(((((((..........(((.....)))....)))))))....).)).)). ( -24.54)
>consensus
CCAAUCAACAGCUCUUUCGGCCAAAACCGAAAAAA___AAAAAACAAAGGAAACUCUGGCUUAAACAACUCGCUAUAAUUUGUAGACCCAAACCGGGGAAAAUGGCGAAAAAGAAGGUGA
....((.((((...((((((......))))))............((.((....)).)).....................)))).))(((.....)))....................... (-15.29 = -15.10 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:49 2006