Locus 8224

Sequence ID	X_DroMel_CAF1
Location	20,424,646 – 20,424,761
Length	115
Max. P	0.807045

overview

Window 2

Location	20,424,646 – 20,424,761
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	85.94
Mean single sequence MFE	-26.04
Consensus MFE	-19.38
Energy contribution	-19.00
Covariance contribution	-0.37
Combinations/Pair	1.22
Mean z-score	-1.89
Structure conservation index	0.74
SVM decision value	0.64
SVM RNA-class probability	0.807045
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20424646 115 - 22224390
AAAUGUGCGGAGCCAUGGAGAAAUCCUUUAAAAAUCUCAAUUGGCUUCUGAUUAGUUUGGAUAUUUUGCUGAUGUGUUAUUUAUAUUGUUUUCUUUGUACAGCACAGUAUAAUGU
...((((((((((((..((((.............))))...))))))).((.((((.((((((...(((....))).)))))).))))...))........)))))......... ( -25.62)
>DroSec_CAF1 13846 115 - 1
AAAUGUGCGCAGCCAUGGAGAAAUCCCUUAAAAAUCUCAAUUGGCUUCUGAUUAAUUUGGAUAUUUUGUUGAUGUGUUAUUUAUAUUGUUCUCUUUGCACAUCAAAGUAUAAUGU
...(((((..(((((..((((.............))))...)))))((..(.....)..)).......(((((((((...................))))))))).))))).... ( -24.63)
>DroEre_CAF1 13178 115 - 1
AAAUGUGCGGAGCCAUGGAGAAAUCUCUUAGAAAUCUCAAUUGGCUCCUGAUUAAUUUGGAUAUUUUGUUGAUGUUUUAUUUACAUUGUUCUCUUGGUGCAUAAAAAUAUAAUUU
...((((((((((((..((((..((.....))..))))...)))))))..(((((...(((((...(((.((((...)))).))).)))))..))))))))))............ ( -29.50)
>DroYak_CAF1 10318 108 - 1
AAAUGUGCGGCGCCAUGGAGAAAUCCCUUGAAAA-------UGGCUUCUGAUUAAUUUGUAUAUUUUGCUGAUGUUUUAUUUACAUUGUUCUCGUUGCACACAAAAAUAUAAUAU
...((((((((((((((((....))).......)-------))))....((..(...((((.((...((....))...)).))))...)..)))))))))).............. ( -24.41)
>consensus
AAAUGUGCGGAGCCAUGGAGAAAUCCCUUAAAAAUCUCAAUUGGCUUCUGAUUAAUUUGGAUAUUUUGCUGAUGUGUUAUUUACAUUGUUCUCUUUGCACAUAAAAAUAUAAUGU
...((((((((((((.(((....)))...............))))))).((.((((.((((((..............)))))).)))).)).....))))).............. (-19.38 = -19.00 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:48 2006