Locus 8220

Sequence ID X_DroMel_CAF1
Location 20,421,157 – 20,421,276
Length 119
Max. P 0.908761
window13506

overview

Window 6

Location 20,421,157 – 20,421,276
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.99
Mean single sequence MFE -26.24
Consensus MFE -25.38
Energy contribution -25.38
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 1.06
SVM RNA-class probability 0.908761
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20421157 119 - 22224390
GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-AAAGCCGACUUC
(((((((((...(((........)))...).))))).........................(((((........)))))............................-...)))...... ( -25.50)
>DroSec_CAF1 10359 119 - 1
GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-AAAGCCGACUUC
(((((((((...(((........)))...).))))).........................(((((........)))))............................-...)))...... ( -25.50)
>DroAna_CAF1 11462 120 - 1
GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAUUUGGGGCUGACCAGCAAAACCAAAUGAAACCAAAACCGAAAGCCGACUUC
((((((((....(((........)))...(((..((((...))))..))).............)))))((((((.(((....)))....))))))................)))...... ( -29.00)
>DroEre_CAF1 9819 119 - 1
GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-AAAGCCGACUUC
(((((((((...(((........)))...).))))).........................(((((........)))))............................-...)))...... ( -25.50)
>DroYak_CAF1 6681 119 - 1
GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC-GAAGCCGACUUC
(((((((((...(((........)))...).)))))....((.((................(((((........)))))...............((....))..)))-)..)))...... ( -25.70)
>consensus
GGCGUGGCCACAUGCAUUUCACCGCAAACGAGCCACUCAACGAGUAUUUCAAAAUAACAGACAGCCGCAGCCGAGGCUGACCAGCAAAACCAAAUGAAACCAAAACC_AAAGCCGACUUC
(((((((((...(((........)))...).))))).........................(((((........)))))................................)))...... (-25.38 = -25.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:42 2006