| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,419,145 – 20,419,241 |
| Length | 96 |
| Max. P | 0.888493 |
| Location | 20,419,145 – 20,419,241 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.93 |
| Mean single sequence MFE | -36.18 |
| Consensus MFE | -24.51 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888493 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20419145 96 - 22224390 UUGGGUGUC------------------------CGGGUGUCUGGGUGCGUGCGACUGGUUUGUUUGGGGUAAGUGUUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCGCAAAUUUAGUUG ....(..((------------------------(((....)))))..)......(((((.((((..(..(....)..)..)))).)))))...(((((((((.....))))))))).... ( -32.80) >DroSec_CAF1 8505 96 - 1 UUGGGUGUC------------------------CGGGUGUCUGGGUGCGUGCGACUGGUUUGUUUGGGGUAAGUGUUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCGCAAAUUUAGUUG ....(..((------------------------(((....)))))..)......(((((.((((..(..(....)..)..)))).)))))...(((((((((.....))))))))).... ( -32.80) >DroAna_CAF1 9157 94 - 1 GUGUAUUUU------------------------CGGGUGUAAGUGUUCUGGGCUCUGGUCU--CUGGACUCUGGACUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCACAAAUUUAGUUG (((((((((------------------------(((((((.((.((((.(((.((..(...--)..))))).)))).))..)))).)))))))))((....))...)))........... ( -26.40) >DroSim_CAF1 4924 96 - 1 UUGGGUGGC------------------------CGGGUGUCUGGGUGCGUGCGACUGGUUUGUUUGGGGUAAGUGUUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCGCAAAUUUAGUUG ....(((.(------------------------(((....)))).)))......(((((.((((..(..(....)..)..)))).)))))...(((((((((.....))))))))).... ( -31.00) >DroEre_CAF1 7771 112 - 1 UUUGGUAUCU--------GGGCGUCCGGCUGUUCGGGUGUCCGGGUGCGUGCGACUGGUUUGUUUGGGGUAAGUGUUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCGCAAAUUUAGUUG ....((((((--------((((..((((....))))..))))))))))......(((((.((((..(..(....)..)..)))).)))))...(((((((((.....))))))))).... ( -46.80) >DroYak_CAF1 4540 120 - 1 AUGGGUGUCCGUAUGUACGGGUGUCCGUAUGUUCGGGUGUCCGGGUGCGUGCGACUGGUUUGUUUGGGGUAAGUGUUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCGCAAAUUUAGUUG ..(((..((((.((((((((....)))))))).))))..)))(((((((.((..(((((.((((..(..(....)..)..)))).)))))......)).))).))))............. ( -47.30) >consensus UUGGGUGUC________________________CGGGUGUCUGGGUGCGUGCGACUGGUUUGUUUGGGGUAAGUGUUCUGGGCAUGCCGGAAAUAAGUUUGCUGCCCGCAAAUUUAGUUG .................................((((((((((..(((.(((..(..(.....)..).))).)))..).)))))).)))....(((((((((.....))))))))).... (-24.51 = -23.73 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:41 2006