| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,418,462 – 20,418,570 |
| Length | 108 |
| Max. P | 0.794051 |
| Location | 20,418,462 – 20,418,570 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.58 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -19.68 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20418462 108 - 22224390 ------------CACAUGCUUCACAUUGUUGUUGCUGCUGGCCAAAAAAUACCACAGACGGGGAAGCAAAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAGCCCCAGUA ------------............((((..(((((((((((..........))...(((.(((.........)))...))).......................)))))))))..)))). ( -21.10) >DroSec_CAF1 7829 108 - 1 ------------CACAUGCCGCACAUUGUUGUUGCUGCUGGCCAAAAAAUACCACAGACGGGGCAGCAAAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAGCCCCAGUA ------------............((((..(((((((((((..........))...(((.(((.........)))...))).......................)))))))))..)))). ( -21.10) >DroAna_CAF1 8502 118 - 1 CCAUCCAAUGUCCAAAUACUUGGAAUUGUUGGUGCUGCUGUUCGA--AAUACCACAGACGGGGGAACAAAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAACAGCAGUA ....(((((.(((((....)))))...)))))((((((((((...--.........(((.(((.........)))...)))..............((((......)))).)))))))))) ( -32.70) >DroSim_CAF1 4248 108 - 1 ------------CACAUGCCGCACAUUGUUGUUGCUGCUGGCCAAAAAAUACCACAGACGGGGAAGCAAAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAGCCCCAGUA ------------............((((..(((((((((((..........))...(((.(((.........)))...))).......................)))))))))..)))). ( -21.10) >DroEre_CAF1 7131 108 - 1 ------------CACAUGCUUCACAUUGUUGUUGCUGCUGGCCAAAAAAUACCACAGACGGGGAAGCACAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAGCCCCAGUA ------------............((((..(((((((((((..........))...(((.(((.........)))...))).......................)))))))))..)))). ( -21.10) >DroYak_CAF1 3884 108 - 1 ------------CACAUACUUAACAUUGUUGUUGCUGCUGGCCGAAAAAUACCACAGACGGGGAAGCAAAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAGCCCCAGUA ------------............((((..(((((((((((..........))...(((.(((.........)))...))).......................)))))))))..)))). ( -21.10) >consensus ____________CACAUGCUUCACAUUGUUGUUGCUGCUGGCCAAAAAAUACCACAGACGGGGAAGCAAAAACCCAAAGUCCAAUUAAAAUUUAACUACAUCAAAGUAGCAGCCCCAGUA ........................((((..(((((((((((..........))...(((.(((.........)))...))).......................)))))))))..)))). (-19.68 = -20.02 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:40 2006