Locus 8211

Sequence ID X_DroMel_CAF1
Location 20,408,757 – 20,408,856
Length 99
Max. P 0.601913
window13492

overview

Window 2

Location 20,408,757 – 20,408,856
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 89.21
Mean single sequence MFE -26.62
Consensus MFE -20.50
Energy contribution -21.08
Covariance contribution 0.59
Combinations/Pair 1.08
Mean z-score -2.68
Structure conservation index 0.77
SVM decision value 0.14
SVM RNA-class probability 0.601913
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20408757 99 - 22224390
AUAUUACCA----CCUCAC-ACUGCAGGACAUUCGAGCACUUGAAGUCCUUACUCGGGAUUUUGCUGAUGCAGCAAGGACACUUCCUUGCUAAUACUUCACUUC
.........----......-...(((((((.(((((....)))))))))....((((.......)))))))((((((((....))))))))............. ( -25.40)
>DroSec_CAF1 101406 99 - 1
AUAUUACCA----CCUCAC-ACUGCAGGACAUUCGAGCGCUUGAAGUCCUUACUCGGGAUUUUGCUGAUGCAGCAAGGACACUUCCUUGCUAAUACUUCACUUC
.........----......-...(((((((.(((((....)))))))))....((((.......)))))))((((((((....))))))))............. ( -25.40)
>DroSim_CAF1 55212 99 - 1
AUAUUACCA----CCUCAC-ACUGCAGGACAUUCGAGCGCUUGAAGUCCUUACUCGGGAUUUUGCUGAUGCAGCAAGGACACUUCCUUGCUAAUACUUCACUUC
.........----......-...(((((((.(((((....)))))))))....((((.......)))))))((((((((....))))))))............. ( -25.40)
>DroEre_CAF1 56254 99 - 1
AUAUUACCA----CCUCAC-ACUGCAGGACAUUCGAGCGCUUGAAGUCCUCACUCGGGCUUUUGCUGAUGCAGCAAGGACACUUCCUUGCUAACACUUCACUUC
.........----......-...(((((((.(((((....))))))))).......(((....)))..)))((((((((....))))))))............. ( -26.30)
>DroYak_CAF1 48105 99 - 1
AUAUUACCA----CCUCAC-ACUGCAGGACAUUCGAGCGCUUGAAGUCCUUGCUCGGGUCUUUGCUGAUCCAGCAAGGACACUUCCUUGCUAAUACUUCACUUC
.........----......-...((((((..(((((....)))))(((((((((.(((((......))))))))))))))...))).))).............. ( -32.40)
>DroAna_CAF1 83084 104 - 1
CUAUUACUGAAGGACUCAUUCCCACAGAAAGUCCUGCCGCUUGGAAUCCUUUCUCGAGAUUUUGCUGAUGCAGCAAGGACAUUUCCUUGCUAAUACUUCACUUC
..........((((((..(((.....)))))))))....(((((((....))).)))).....((....))((((((((....))))))))............. ( -24.80)
>consensus
AUAUUACCA____CCUCAC_ACUGCAGGACAUUCGAGCGCUUGAAGUCCUUACUCGGGAUUUUGCUGAUGCAGCAAGGACACUUCCUUGCUAAUACUUCACUUC
.......................(((((((.(((((....)))))))))....((((.......)))))))((((((((....))))))))............. (-20.50 = -21.08 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:30 2006