Locus 821

Sequence ID X_DroMel_CAF1
Location 2,300,686 – 2,300,799
Length 113
Max. P 0.841926
window1329

overview

Window 9

Location 2,300,686 – 2,300,799
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.58
Mean single sequence MFE -18.15
Consensus MFE -14.84
Energy contribution -15.04
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.82
SVM decision value 0.75
SVM RNA-class probability 0.841926
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2300686 113 + 22224390
CUUACAUUACCAAUUCCUUAUACUAAAGUUUGUAUAUUUUCAA-------AUUCAAUAUUUAACUAAAACAAAACGAAGCAGCAUUAACGUUUAACGACUUAGCUGCUUAGCUGUUUUUU
..................(((((........))))).......-------...............((((((.....(((((((.....((.....)).....)))))))...)))))).. ( -16.00)
>DroSec_CAF1 14831 113 + 1
UUUACAUUACCAAUUACUUAUACUUAAGUUUGUAUAUUUUCAA-------AUUCAAUAUUUACCUAAAACAAAACAAAGCAGCAUUAGCGUUUAACGACUUAGCUGCUUAGCUGUUUUUU
..................(((((........))))).......-------....................(((((((((((((...((((.....)).))..)))))))...)))))).. ( -17.40)
>DroSim_CAF1 14447 113 + 1
UUUACAUUACCAAUUACUUAUACUUAAGUUUGUAUAUUUUCAA-------AUUCAAUAUUUACCUAAAACAAAACAAAGCAGCAUUAGCGUUUAACGACUUAGCUGCUUAGCUGUUUUUU
..................(((((........))))).......-------....................(((((((((((((...((((.....)).))..)))))))...)))))).. ( -17.40)
>DroEre_CAF1 15188 114 + 1
GUUACAUUACCAAUUACUUAUACUACAGUUUGUAAAUUUUUAAG------AAUCAAUCUCUACCUAAAACAAAAUCAAGCAGCAUUAGCGUUUAACGACUUAGCUGCUUAGGUGUUUAUU
.......((((.................(((((.........((------(.....))).........)))))...(((((((...((((.....)).))..))))))).))))...... ( -17.97)
>DroYak_CAF1 15232 120 + 1
GUUACAUUACCAAUUACUUAUACUAAAGUUUGUAUAUUUGUAAUAUUUUUAAUCAAUCUUUACCUUAAACAAAGUCAAGCAGCAUUAGCGUUUAACGACUUAGCUGCUUAGCUGUUUUUU
............(((((.(((((........)))))...)))))............................((..(((((((...((((.....)).))..)))))))..))....... ( -22.00)
>consensus
GUUACAUUACCAAUUACUUAUACUAAAGUUUGUAUAUUUUCAA_______AUUCAAUAUUUACCUAAAACAAAACAAAGCAGCAUUAGCGUUUAACGACUUAGCUGCUUAGCUGUUUUUU
..................(((((........)))))..............................(((((.....(((((((.....((.....)).....)))))))...)))))... (-14.84 = -15.04 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:36 2006