Locus 8208

Sequence ID X_DroMel_CAF1
Location 20,399,940 – 20,400,036
Length 96
Max. P 0.737292
window13488

overview

Window 8

Location 20,399,940 – 20,400,036
Length 96
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 75.56
Mean single sequence MFE -23.24
Consensus MFE -11.68
Energy contribution -11.32
Covariance contribution -0.36
Combinations/Pair 1.13
Mean z-score -1.87
Structure conservation index 0.50
SVM decision value 0.44
SVM RNA-class probability 0.737292
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20399940 96 + 22224390
CAAGCGUCUGUGUGUGUCUUGGCGUUUGUUUGAAAUUUUACCAAGCCUCGCAAGUAAUGGGUAGAAUUUUUAAUUAUUUAC----ACU----CACAC-ACCCAGC
...((....(((((((...((......(((.(((((((((((......(....).....))))))))))).)))......)----)..----)))))-))...)) ( -25.80)
>DroVir_CAF1 72118 103 + 1
UAACUGUGUGUG--GAUGUAUGUGCCUGUUUGAAAUUUUAUCAAGCGACGCAAGUAAUGGGUAAAAUUUUUAAUUAUUCACUGACUCCCCCACCCGCCACACGCA
.....(((((((--(..((..(((...(((.(((((((((((.....((....))....))))))))))).)))....)))..))...........)))))))). ( -27.52)
>DroPse_CAF1 72923 94 + 1
CGUGUACGUUUG--CGUCUUGGUGUUUGUUUGAAAUUUUAUCAAGCAUCGCAAGUAAUGGGUAGAAUUUUUAAUUAUUCAC----CCC----CUACU-CAUGCAU
.....(((....--)))...((((((((..(((....))).))))))))(((((((..((((.((((........))))))----)).----.))))-..))).. ( -22.90)
>DroSim_CAF1 46514 94 + 1
CAAGCGUCAGAG--UGUCUUUGCGUUUGUUUGAAAUUUUACCAAGCCUCGCAAGUAAUGGGUAGAAUUUUUAAUUAUUUAC----ACU----CACAC-ACCCACC
((((((.(((((--...)))))))))))...(((((((((((......(....).....)))))))))))...........----...----.....-....... ( -21.00)
>DroYak_CAF1 38588 94 + 1
CAAGCGUCUGUG--AGUCCUGGCGUUUGUUUGAAAUUUUACCAAGCCUCGCAAGUAAUGGGUAGAAUUUUUAAUUAUUUAC----ACU----CACAC-ACCUACC
..((.((.((((--(((..........(((.(((((((((((......(....).....))))))))))).))).......----)))----)))).-))))... ( -23.13)
>DroAna_CAF1 74393 89 + 1
------UGUGUG--UUUCUUGGCGUUUGUUUGAAAUUUUACCGAGCAUCGCAAGUAAUGGGUAGAAUUUUUAAUUAUUUAC---CUCU----CACCC-ACAGGCU
------((((.(--(.....((.....(((.(((((((((((.(....(....)...).))))))))))).)))......)---)...----.)).)-))).... ( -19.10)
>consensus
CAAGCGUCUGUG__UGUCUUGGCGUUUGUUUGAAAUUUUACCAAGCCUCGCAAGUAAUGGGUAGAAUUUUUAAUUAUUUAC____ACU____CACAC_ACCCACC
...........................(((.(((((((((((......(....).....))))))))))).)))............................... (-11.68 = -11.32 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:26 2006