Locus 8207

Sequence ID X_DroMel_CAF1
Location 20,395,110 – 20,395,203
Length 93
Max. P 0.860695
window13487

overview

Window 7

Location 20,395,110 – 20,395,203
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 86.06
Mean single sequence MFE -22.95
Consensus MFE -14.98
Energy contribution -15.97
Covariance contribution 1.00
Combinations/Pair 1.07
Mean z-score -2.53
Structure conservation index 0.65
SVM decision value 0.83
SVM RNA-class probability 0.860695
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20395110 93 + 22224390
AUUUGUUUUGGUCAGCAUAUAUCUUUAUAUAUGUAUGUGUAUGUAGGUGUGUGUGUGUAGAAUUAAACAUUUACAGUGGUCGCUGGUCACAAU
....(((.((..((((((((((((.(((((((....))))))).))))))))...((((((........))))))......))))..)).))) ( -25.10)
>DroSec_CAF1 87997 87 + 1
AUUUGUUUUGGUCAGCAUAUAUCUUUAUAUAU----GCGUAUGUAGCUCUG--UGUGCAGAACUAAACAUUUACAGUGGUCGCUGGUCACAAU
...(((((...((.((((((((....))))))----))(((..((....))--..))).))...)))))......(((..(...)..)))... ( -21.00)
>DroEre_CAF1 43136 85 + 1
AUUUGUUUUGGUCAGCAUAUAUCUUUAUAUAU----ACACAUGUAGGUCUG--UGUGCAGAAUUAAACAUUUACAGUGGUCGCUGGGC--GAU
.......(((.((((((((((....)))))..----.(((.((((((((((--....))))........)))))))))...))))).)--)). ( -19.90)
>DroYak_CAF1 33523 81 + 1
AUUUGUUUUGGUCAGCAUAUAUCUUUAUAUA--------AAUGUAGGUGUG--UGUGCAGAAAUAAACAUUUACAGUGGUCGCUGGCC--AGU
.......((((((((((((((....))))).--------..(((((((((.--(((......))).)))))))))......)))))))--)). ( -25.80)
>consensus
AUUUGUUUUGGUCAGCAUAUAUCUUUAUAUAU____GCGUAUGUAGGUCUG__UGUGCAGAAUUAAACAUUUACAGUGGUCGCUGGUC__AAU
...(((((...((.((((((((.(((((((((......))))))))).)))..))))).))...)))))....((((....))))........ (-14.98 = -15.97 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:26 2006