| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,393,666 – 20,393,774 |
| Length | 108 |
| Max. P | 0.619692 |
| Location | 20,393,666 – 20,393,774 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -34.58 |
| Consensus MFE | -17.24 |
| Energy contribution | -16.97 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20393666 108 - 22224390 UUUCGACCAAUUAUAAGUUGCGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGGCACAUGCCCGGCCG---CGUGUGCGAGUGAGAUGGCCGUUCCGUAUGCUUCGCGG ...((.(((.......(((((((....))))))).(((((((..(((....))).((((((((......)---)))))))))))))).))).))..((((.......)))) ( -37.70) >DroVir_CAF1 64830 97 - 1 UUUCGACCAAUUAUAAGUUGUGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGGCAUGUGCCUGACUG---GGCGUGCGUGCGAGUGGGCAGGC---AAUA-------- ....(.((........(((((((....))))))).(((((((..(((....))).((((((((((....)---)))..)))))))))))))..)))---....-------- ( -29.90) >DroGri_CAF1 56592 103 - 1 UUUCAACCAAUUAUAAGUUGUGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGGCAUAUGCCCGGCUG---CACGUGCGUGCGAGCAGGCAGGC---AAUAGAUGUA-- ................(((((((....)))))))(((((((...(((....))).((...((((..((((---(((....)))).))).)))).))---)))))))...-- ( -31.60) >DroEre_CAF1 41726 108 - 1 UUUCGACCAAUUAUAAGUUGCGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGGCACAUGCCCGGCUG---CGUGUGUGAGUGAGAUGGCCGUCCCGUAUGCCUUGCGG ...((.(((.......(((((((....))))))).(((((((..(((....))).((((((((......)---)))))))))))))).))).))..(((((.....))))) ( -37.60) >DroMoj_CAF1 77857 100 - 1 UUUCGACCAAUUAUAAGUUGUGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGGCAUAUGCCUGACUG---GGCGUGCGUGCGAGCGGGCCGGC---AAUAC---UG-- ..(((.((........(((((((....)))))))...............((((((((.(((((((....)---)))))).)).)))))))).))).---.....---..-- ( -31.40) >DroAna_CAF1 68483 106 - 1 UUUCGACCAAUUAUAAGUUGCGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGACACAGGCCUCGUCGGGCCGAGUGCGAACGAGACGGU----GCGAACGCAUGUCG- .(((((((........(((((((....)))))))...............((((((.(((.(((((....)))))..)))))))))....)))----.)))).........- ( -39.30) >consensus UUUCGACCAAUUAUAAGUUGCGGUUAACCGCAACAUUUAUUCAAGAAAAUGUUCGGCACAUGCCCGGCUG___CGCGUGCGAGCGAGAGGGCCGGC___AAUAC_U_UC__ .((((..(........(((((((....)))))))................(((.(((....))).)))............)..))))........................ (-17.24 = -16.97 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:25 2006