Locus 8205

Sequence ID X_DroMel_CAF1
Location 20,389,922 – 20,390,016
Length 94
Max. P 0.727568
window13485

overview

Window 5

Location 20,389,922 – 20,390,016
Length 94
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -23.98
Consensus MFE -15.38
Energy contribution -15.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.64
SVM decision value 0.42
SVM RNA-class probability 0.727568
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20389922 94 - 22224390
AAAAGCAAAGCCAGCUC---UUCUUGGCUUAAAGCCAGCGAUU-UCCAAUUUGGUUUAGCGUAAAUUCGAUUGAAUAUCGC--------AUUUACUUGGCUUGUUC
...(((.(((((((...---...))))))).((((((((....-.((.....))....))((((((.((((.....)))).--------)))))).))))))))). ( -27.60)
>DroSec_CAF1 72180 84 - 1
----------CCAGCUC---UGCUUGGCUUAAAGCCAGCGAUU-UCCAAUUUGGUGUAGCGUAAAUUCGAUUGAAUAUCGU--------AUUUACUUGGCUUGUUC
----------..((((.---.....))))..((((((((....-.((.....))....))((((((.((((.....)))).--------)))))).)))))).... ( -21.90)
>DroEre_CAF1 37886 92 - 1
AAAAGCA---CCAGCUC---UUCUUGGCUUAAAGCCAGCGAUUUUCCAAUUUGGUGUAGCGUAAAUUCGAUUGAAUAUCGU--------AUUUAUUUGGCUUGUUC
....(((---((((...---.(((((((.....))))).)).........)))))))(((((((((.((((.....)))).--------))))))...)))..... ( -20.72)
>DroYak_CAF1 28084 103 - 1
AAAAGCU---UCAGCUCCAGUUCUUGGCUUAAAGCCAGCGAUUUUCCAAUUUGGUGCAGCGUAAAUUCGAUUGAAUAUCGAAUAUAUGAAUUUAUUUGGCUUGUUC
..(((((---...((.((((.(((((((.....))))).)).........)))).))..((((.(((((((.....))))))).)))).........))))).... ( -25.70)
>consensus
AAAAGCA___CCAGCUC___UUCUUGGCUUAAAGCCAGCGAUU_UCCAAUUUGGUGUAGCGUAAAUUCGAUUGAAUAUCGU________AUUUACUUGGCUUGUUC
............((((.........))))..(((((((((.....((.....)).....))).....((((.....))))................)))))).... (-15.38 = -15.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:24 2006