| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,387,605 – 20,387,705 |
| Length | 100 |
| Max. P | 0.854916 |
| Location | 20,387,605 – 20,387,705 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.93 |
| Mean single sequence MFE | -18.46 |
| Consensus MFE | -10.74 |
| Energy contribution | -10.43 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20387605 100 + 22224390 ----------AUAAAAUGAUUUAUGGGCGAGCAAAUAAUUUGGACACAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAACAACA-CGCUCGGCCC-UCUCAUUC----CCGC ----------....(((((.....((((((((................((((((.....))))))(((........))).........-.)))).))))-..))))).----.... ( -19.00) >DroVir_CAF1 58113 98 + 1 -----------CGAAAUGAUUUAUGUGCGAGCAAAUAACUUGGACAUAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAACACGA-C-C-CGAGCC-CGA---GCCCGGACUG -----------....(((((((((((.((((.......)))).)))))((((((.....))))))...))))))..............-.-(-((.((.-...---)).))).... ( -19.40) >DroGri_CAF1 50595 79 + 1 -----------CAAAAUGAUUUAUGUGCGAGAAAAUAACUUGGACAUAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAACACGA-C-C------------------------ -----------....(((((((((((.((((.......)))).)))))((((((.....))))))...))))))..............-.-.------------------------ ( -13.80) >DroEre_CAF1 35373 101 + 1 ----------AUAAAAUGAUUUAUGGGCGAGCAAAUAAUUUGGACACAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAACAACA-CGCUCGGCCCCCCUCAUUC----CCGC ----------....(((((.....((((((((................((((((.....))))))(((........))).........-.)))).))))...))))).----.... ( -18.70) >DroMoj_CAF1 69670 94 + 1 -----------CGAAAUGAUUUAUGUGCGAGCAAAUAACUUGGGCAUAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAAC-CGA-C-CUCAACCC-CCC---GC----CCCC -----------....(((((((((((.((((.......)))).)))))((((((.....))))))...))))))..........-...-.-........-...---..----.... ( -14.10) >DroAna_CAF1 62239 109 + 1 UGGCCUCGGCGCAAAAUGAUUUAUGGUCGAGCAAAUAAUUUCGACAUAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAACAACUUCUCCUGGCCA-ACUCGGUC----UC-- (((((..((.(.....(((((((((((((((........))))))...((((((.....))))))......))))))))).........).)).)))))-........----..-- ( -25.74) >consensus ___________CAAAAUGAUUUAUGGGCGAGCAAAUAACUUGGACAUAAAGGUAACAAAUACUUUGAUAAUCAUAAAUCACAACAACA_C_CUCGGCCC_CCU___UC____CC_C ................(((((((((..((((.......))))....(((((..........))))).....))))))))).................................... (-10.74 = -10.43 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:23 2006