Locus 8203

Sequence ID X_DroMel_CAF1
Location 20,385,957 – 20,386,059
Length 102
Max. P 0.957568
window13483

overview

Window 3

Location 20,385,957 – 20,386,059
Length 102
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 73.50
Mean single sequence MFE -16.92
Consensus MFE -12.65
Energy contribution -13.04
Covariance contribution 0.39
Combinations/Pair 1.14
Mean z-score -1.43
Structure conservation index 0.75
SVM decision value 1.48
SVM RNA-class probability 0.957568
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20385957 102 - 22224390
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUCGUCUUCAAAAACCCAAAAAAAG--AGAAAAAAAAACCAAGAUGGGGACAUAGUUAACAA-----AAACAGCAAU-
...(((((...............)))))((((..............)))).......--.........(((....(((....))).))).....-----..........- ( -15.30)
>DroSec_CAF1 68334 89 - 1
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUUGUCUUCAAAAACCCAAA---------------AACCCAAGAUGGGGACAUAGUUAACAA-----AAACAGCAAU-
...(((((...............)))))((((.(((....)))...))))..---------------..(((.....)))......(((.....-----.)))......- ( -18.46)
>DroSim_CAF1 38079 89 - 1
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUUGUCUUCAAAAACCCAAA---------------AACCCAAGAUGGGGACAUAGUUAACAA-----AAACAGCAAU-
...(((((...............)))))((((.(((....)))...))))..---------------..(((.....)))......(((.....-----.)))......- ( -18.46)
>DroEre_CAF1 34189 101 - 1
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUUGUCUUCAAAAACCCAAAAACC--------CAAAGCCCAAGAUGGGGACAAAGUUAACAACAAAAAAAGA-AAUGG
...(((((...............)))))((((.(((....)))...)))).....(--------((...(((.....)))......((.....)).........-..))) ( -18.56)
>DroYak_CAF1 24389 81 - 1
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUUGUCUUCAAAAACU-----------------------CAAGAUGGGGACAAAGUUAACAA-----AAAAA-AAUUG
...(((((...............)))))(((..(((((((((......-----------------------.....)))))))))..)))....-----.....-..... ( -15.56)
>DroPer_CAF1 55043 84 - 1
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUUGUCUUCAG--ACCCAAGACCAGCCAAAAAAAAAAACAACGAUGAAGACU------------------------GU
...(((((...............)))))...(((((((((...--....)))).))))).........................------------------------.. ( -15.16)
>consensus
UAUGAGGCACGAAAAUUUACAACGCCUCUGGGGUUGUCUUCAAAAACCCAAA_______________AACCCAAGAUGGGGACAUAGUUAACAA_____AAACA_CAAU_
...(((((...............)))))((((.(((....)))...))))..........................((....)).......................... (-12.65 = -13.04 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:22 2006