| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,375,462 – 20,375,552 |
| Length | 90 |
| Max. P | 0.655507 |
| Location | 20,375,462 – 20,375,552 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 78.27 |
| Mean single sequence MFE | -40.78 |
| Consensus MFE | -18.10 |
| Energy contribution | -18.46 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20375462 90 - 22224390 AAGCGGCCGCAUGGUG---GCCAAAAAAGGGGGCGGCGGUAAAGGCCGCUGGGCGACCGCCCAAGGCCAUGUGGGCGCGCCAGUCGGGCGCAU ....(.(((((((((.---.((......))((((((((((....))))))((....))))))...))))))))).)(((((.....))))).. ( -51.20) >DroPse_CAF1 44484 87 - 1 AUG---CUGCAUGAUG---GCCGAAGAAUGGGCCUGCUGGAAAACCCGCUGAACGCCCACCCAAGGCCAUGUGGGCACGCCAAUCGGGUGCAU ...---(..((...((---(((......(((((..((.((....)).)).....))))).....)))))))..)((((.((....)))))).. ( -32.20) >DroGri_CAF1 40257 90 - 1 AGGCAGCUCCAUGGUGGUGCGCAAAGAAGGGGCCAGCGGGAAAGCC---GGGACGACCACCCAGUGCCAUGUGAGCUCGCCAAUCGGGUGCAU .(((((((((((((((((.(.(......)).))).((((.....))---(((.......))).)))))))).))))).)))............ ( -32.60) >DroEre_CAF1 22458 90 - 1 AAGCGGCCGCAUGGUG---GCCGAAAAAGGGGGCGGUGGUAAAGGCGGCUGGGCGGCCGCCCAAGGCCAUGUGGGCGCGCCAGUCGGGAGCAU ..(((.(((((((((.---.((......))(((((((.((..((....))..)).)))))))...))))))))).)))(((......).)).. ( -47.20) >DroYak_CAF1 13140 90 - 1 AAGCGGCCGCAUGGUG---ACCGAAAAAGGGGGCGGCGGUAAAGGCGGCGGGGCGACCGCCCAAGGCCAUGUGGGCGCGCCAAUCGGGCGCAU ....(.(((((((((.---.((......))((((.((.((....)).)).((....))))))...))))))))).)(((((.....))))).. ( -47.00) >DroPer_CAF1 45061 87 - 1 AUG---CCGCAUGAUG---CCCGAAGAAUGGGCCUGCUGGGAAGCCCGCUGAACGCCCACCUAGGGCCAUGUGGGCACGCCAAUCGGGAGCAU ...---(((((((..(---(((..((..(((((..((.((....)).)).....))))).)).)))))))))))((.(.((....))).)).. ( -34.50) >consensus AAGCGGCCGCAUGGUG___GCCGAAAAAGGGGCCGGCGGGAAAGCCCGCUGGACGACCACCCAAGGCCAUGUGGGCGCGCCAAUCGGGAGCAU ......(((((((((..............(((...((.((....)).)).((....)).)))...)))))))))((.(.((....))).)).. (-18.10 = -18.46 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:17 2006