Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,294,629 – 2,294,843 |
Length | 214 |
Max. P | 0.965429 |
Location | 2,294,629 – 2,294,729 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -42.00 |
Consensus MFE | -28.12 |
Energy contribution | -28.09 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.21 |
Mean z-score | -1.95 |
Structure conservation index | 0.67 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2294629 100 + 22224390 GAGGCUUGAGAGGCUCGAGCGGCCUGAGUGGCCUGAGAGCCCGGGGCGGAUGG-CCGAAUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAAC (((((((..(.(((((....((((.....))))...))))))..(((.....)-)).....(((((.(((((((...)))))))))))))))).))).... ( -47.30) >DroSec_CAF1 8847 91 + 1 AAGGCUUGAGCGGCUCGAGCGACC---------UGAGAGCCCUGGGCGGAUGG-CCGAGUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAAC ((((((((((...)))))))(.((---------((.((.(((((((.((((((-((....))))....)))))))))))...))))))).....))).... ( -40.30) >DroSim_CAF1 8444 91 + 1 AAGGCUUGAGAGGCUCGAGCGACC---------UGAGAGCCCUGGGCGGAUGG-CCGAGUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAAC ((((((((((...)))))))(.((---------((.((.(((((((.((((((-((....))))....)))))))))))...))))))).....))).... ( -40.30) >DroEre_CAF1 8683 97 + 1 GAGGCUUGAGAGGCUUGAGAGGCCUGUGUAGCCUGAGUGUCC----CGAGUGUCCUGAGUGGCCUGAGGUCUCCCGGGGAGAUCCAGGCGAGCACUUGAAC .(((((..(.(((((.....))))).)..)))))........----(((((((......(.(((((.(((((((...)))))))))))).))))))))... ( -41.90) >DroYak_CAF1 8930 86 + 1 GAGGCUUGAG--CCGAGAGAUGCCUGGGUUGCCUGAGU-------------GGCCUGGGAUGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAAC ..(((....)--))..(((.((((..(((..(....).-------------.)))..)..((((((.(((((((...))))))))))))).)))))).... ( -40.20) >consensus GAGGCUUGAGAGGCUCGAGCGGCCUG_GU_GCCUGAGAGCCC_GGGCGGAUGG_CCGAGUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAAC (((((((....(((((....................)))))....................(((((.(((((((...)))))))))))))))).))).... (-28.12 = -28.09 + -0.03)
Location | 2,294,629 – 2,294,729 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.77 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -21.84 |
Energy contribution | -22.20 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.26 |
Structure conservation index | 0.60 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2294629 100 - 22224390 GUUCAAGUGCUCGCCUGGAUCUCCCCGGGAGAUCUCAGGCCAUUCGG-CCAUCCGCCCCGGGCUCUCAGGCCACUCAGGCCGCUCGAGCCUCUCAAGCCUC .....((.(((.((((((((((((...))))))).))))).....((-(.....)))..((((((...((((.....))))....))))))....))))). ( -42.00) >DroSec_CAF1 8847 91 - 1 GUUCAAGUGCUCGCCUGGAUCUCCCCGGGAGAUCUCAGGCCACUCGG-CCAUCCGCCCAGGGCUCUCA---------GGUCGCUCGAGCCGCUCAAGCCUU (((..(((((((((((((((((((...))))))).)))))....(((-((....(((...))).....---------)))))...))).))))..)))... ( -37.30) >DroSim_CAF1 8444 91 - 1 GUUCAAGUGCUCGCCUGGAUCUCCCCGGGAGAUCUCAGGCCACUCGG-CCAUCCGCCCAGGGCUCUCA---------GGUCGCUCGAGCCUCUCAAGCCUU (((..((.((((((((((((((((...))))))).)))))....(((-((....(((...))).....---------)))))...))))..))..)))... ( -36.00) >DroEre_CAF1 8683 97 - 1 GUUCAAGUGCUCGCCUGGAUCUCCCCGGGAGACCUCAGGCCACUCAGGACACUCG----GGACACUCAGGCUACACAGGCCUCUCAAGCCUCUCAAGCCUC ((((.((((..(((((((.(((((...))))).).)))))......)..))))..----))))....(((((....((((.......))))....))))). ( -32.60) >DroYak_CAF1 8930 86 - 1 GUUCAAGUGCUCGCCUGGAUCUCCCCGGGAGAUCUCAGGCAUCCCAGGCC-------------ACUCAGGCAACCCAGGCAUCUCUCGG--CUCAAGCCUC ......(((((.((((((((((((...))))))).))))).......(((-------------.....)))......))))).....((--(....))).. ( -33.20) >consensus GUUCAAGUGCUCGCCUGGAUCUCCCCGGGAGAUCUCAGGCCACUCGG_CCAUCCGCCC_GGGCUCUCAGGC_AC_CAGGCCGCUCGAGCCUCUCAAGCCUC .....((.(((.((((((((((((...))))))).))))).....................................(((.......))).....))))). (-21.84 = -22.20 + 0.36)
Location | 2,294,666 – 2,294,764 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.46 |
Mean single sequence MFE | -34.97 |
Consensus MFE | -23.31 |
Energy contribution | -25.55 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.12 |
Mean z-score | -2.16 |
Structure conservation index | 0.67 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2294666 98 + 22224390 -AGCCCGGGGC----GGAUGG-CCGAAUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAACU----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UG -((((((((((----.....)-)).....(((((.(((((((...)))))))))))).............----....))))..)))....((((((.....))))-)) ( -36.00) >DroSec_CAF1 8875 98 + 1 -AGCCCUGGGC----GGAUGG-CCGAGUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAACU----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UG -.(((...)))----....(.-.(((((((((((.(((((((...))))))))))))...))))))..).----...(((..((((((....))))))..)))...-.. ( -38.20) >DroSim_CAF1 8472 98 + 1 -AGCCCUGGGC----GGAUGG-CCGAGUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAACU----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UG -.(((...)))----....(.-.(((((((((((.(((((((...))))))))))))...))))))..).----...(((..((((((....))))))..)))...-.. ( -38.20) >DroEre_CAF1 8720 95 + 1 -UGUCC----C----GAGUGUCCUGAGUGGCCUGAGGUCUCCCGGGGAGAUCCAGGCGAGCACUUGAACU----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UG -.....----(----((((((......(.(((((.(((((((...)))))))))))).))))))))....----...(((..((((((....))))))..)))...-.. ( -35.40) >DroWil_CAF1 23166 96 + 1 UGGGCCGGGGCAUGGGCAUGG-GC-AUGGGCCUGUG----CCUGGAUAGA-------GAGCACUUGAACUAUGUAAAUCCGGUAGCUUAAACGAGUUAAAGGAACUUUG (((..((((((.(((((((((-((-....)))))))----))))......-------..)).))))..)))......(((..((((((....))))))..)))...... ( -31.20) >DroYak_CAF1 8965 86 + 1 -U-----------------GGCCUGGGAUGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAACU----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UG -.-----------------..(((..((((((((.(((((((...))))))))))))(((((((.((...----...)).))).))))......)))..)))....-.. ( -30.80) >consensus _AGCCC_GGGC____GGAUGG_CCGAGUGGCCUGAGAUCUCCCGGGGAGAUCCAGGCGAGCACUUGAACU____AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU_UG .......................(((((((((((.((((((.....)))))))))))...))))))...........(((..((((((....))))))..)))...... (-23.31 = -25.55 + 2.24)
Location | 2,294,729 – 2,294,843 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.38 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -24.01 |
Energy contribution | -24.07 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -1.37 |
Structure conservation index | 0.89 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2294729 114 + 22224390 U----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGU-GUGUAGCGCGACUGUUGCAUGG .----...(((..((((((....))))))..))).(.-((((((((((((..(((((......)))))(((((...)))))....)))))...((((-(.....)))))))))).)).). ( -27.30) >DroVir_CAF1 20286 114 + 1 U----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGU-GUGUAGCGCGCCUGUUGCAUGG .----...(((..((((((....))))))..)))(((-(((...........(((((......)))))(((((...)))))..))))))........-((((((((....)))))))).. ( -26.30) >DroEre_CAF1 8780 114 + 1 U----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGU-GUGUAGCGCGACUGUUGCAUGG .----...(((..((((((....))))))..))).(.-((((((((((((..(((((......)))))(((((...)))))....)))))...((((-(.....)))))))))).)).). ( -27.30) >DroWil_CAF1 23222 120 + 1 UAUGUAAAUCCGGUAGCUUAAACGAGUUAAAGGAACUUUGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGCAGAGCGUCGCGACUGUUGCAUGG (((((...(((..((((((....))))))..)))......((((((((((..(((((......)))))(((((...)))))....)))))...((((........)))))))))))))). ( -28.10) >DroYak_CAF1 9016 114 + 1 U----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGU-GUGUAGCGCGACUGUUGCAUGG .----...(((..((((((....))))))..))).(.-((((((((((((..(((((......)))))(((((...)))))....)))))...((((-(.....)))))))))).)).). ( -27.30) >DroMoj_CAF1 28594 114 + 1 U----AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU-UGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGU-GUGUAGCGCGCCUGUUGCAUGG .----...(((..((((((....))))))..)))(((-(((...........(((((......)))))(((((...)))))..))))))........-((((((((....)))))))).. ( -26.30) >consensus U____AAAUCCGGUAGCUUAAACGAGUUAAAGGAACU_UGAACGGAACUUAAUCCCAUAAAUUUGGGAAAAAUACAAUUUUAAUCAGGUUAAUUCGU_GUGUAGCGCGACUGUUGCAUGG ........(((..((((((....))))))..))).....(((...(((((..(((((......)))))(((((...)))))....)))))..)))...((((((((....)))))))).. (-24.01 = -24.07 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006