| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,371,710 – 20,371,810 |
| Length | 100 |
| Max. P | 0.636564 |
| Location | 20,371,710 – 20,371,810 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.75 |
| Mean single sequence MFE | -26.83 |
| Consensus MFE | -17.81 |
| Energy contribution | -18.40 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20371710 100 - 22224390 ACUUUCUUCCAUAUUCUUUUUUUUUUUUUGUGCCCCCAUUUUUGGGUACCGCAAUGUGGGGAGA--UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGAG ....((((((...................((((((........))))))(((...)))))))))--(((..(((..(((((....)))))..)))..))).. ( -30.10) >DroSec_CAF1 54331 92 - 1 ACUUUCUUCCAUAUUCUUUUUU--------UGCCCCCAUUUUUGGGUACCGCAAUGUGGGGAGA--UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGAG .......(((............--------...((((((..((((....).))).))))))...--..(..(((..(((((....)))))..)))..)))). ( -28.00) >DroSim_CAF1 20334 92 - 1 ACUUUCUUCCACAUUCUUUUUU--------UGCCCCCAUUUUUGGGUACCGCAAUGUGGGGAGA--UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGAG ....((((((.(((.......(--------(((.((((....))))....)))).)))))))))--(((..(((..(((((....)))))..)))..))).. ( -29.90) >DroEre_CAF1 18670 81 - 1 ACUUUCUUC--------------UUGUU--UUUUGCCAUUUUUGGGUACCGCAAUGUGGGGAUA--UUCUGGUUGGUUGCCAUGGGGCAAGGGGCAAGG--- ........(--------------(((((--(((((((......(((((((.(.....).)).))--)))((((.....))))...))))))))))))).--- ( -26.70) >DroYak_CAF1 9034 98 - 1 ACUUUCUUCCAUAUUCUUUUUUUUUUUU--UUUUGCCAUUUUUGGGUACCGCAAUGUGGGGAGA--UUCUGGUUGGUUGCCAUGGGGCAAGGGGCUGGGAAG ....((((((..................--...((((.......)))).(((...)))))))))--(((..(((..(((((....)))))..)))..))).. ( -25.00) >DroPer_CAF1 40829 88 - 1 ------CUCCUUAUGCUACUUCUUC-----UCCUACUUUUUUUGGGUACCGCAAUGUGGGGAGAUAUUCUGGUUGGUGGGUAUGGU--CAGGGGAUGGUAA- ------((((((((((((((.((((-----((((((((.....)))))((((...)))))))))......))..))).))))))..--.))))).......- ( -21.30) >consensus ACUUUCUUCCAUAUUCUUUUUU_UU_____UGCCCCCAUUUUUGGGUACCGCAAUGUGGGGAGA__UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGAG ......((((.........................(((....)))...((((...))))))))...((((((((..(((((....)))))..)))))))).. (-17.81 = -18.40 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:14 2006