Locus 8195

Sequence ID X_DroMel_CAF1
Location 20,364,399 – 20,364,496
Length 97
Max. P 0.841156
window13470

overview

Window 0

Location 20,364,399 – 20,364,496
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 96.19
Mean single sequence MFE -26.48
Consensus MFE -23.78
Energy contribution -23.98
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.90
SVM decision value 0.75
SVM RNA-class probability 0.841156
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20364399 97 - 22224390
CCUUCCGAAUCCCUGAUUCCCCCGGAAUCUCCUCCACCUUUUCCGCUUACCUGGCAACUUGAAGGGCAAUCCGGCCAUAAGUGGAUCCGGUCCGAAA
.....((.......((((((...))))))......(((...((((((((..((((...(((.....)))....))))))))))))...))).))... ( -24.90)
>DroSec_CAF1 11770 93 - 1
CCUUCCGAAUCC--GAUUCCCCCGGAAU--CCUCCACCUGUUCCGCUUACCUGGCAACUUGAAGGGCAAUCCGGCCAUAAGUGGAUCCGGUCCGAAA
.....((.....--((((((...)))))--)....(((.(.((((((((..((((...(((.....)))....)))))))))))).).))).))... ( -25.40)
>DroSim_CAF1 12218 93 - 1
CCUUCCGAAUCC--GAUUCCCCCGGAUG--CCUCCACCUGUUCCGCUUACCUGGCAACUUGAAGGGCAAUCCGGCCAUAAGUGGAUCCGGUCCGAAA
....(((.((((--(......(((((((--(((......((((((......))).))).....)))).)))))).......))))).)))....... ( -28.32)
>DroEre_CAF1 11165 93 - 1
CCUUCCGAAUCC--GAUUCCCCCGGAAU--CCUCCACCUGUUCCGCUUACCUGGCAACUUGAAGGGCAAUCCGGCCAUAAGUGGAUCCGGUCCGAAA
.....((.....--((((((...)))))--)....(((.(.((((((((..((((...(((.....)))....)))))))))))).).))).))... ( -25.40)
>DroYak_CAF1 153 92 - 1
CCUUCCGAAUCC--GAUUCC-CCGGAAU--GCUCCACCUGUUCCGCUUACCUGGCAACUUGAAGGGCAAUCCGGCCAUAAGUGGAUCCGGUCCGAAA
....(((.((((--(.....-(((((.(--((((..(..((((((......))).)))..)..))))).))))).......))))).)))....... ( -28.40)
>consensus
CCUUCCGAAUCC__GAUUCCCCCGGAAU__CCUCCACCUGUUCCGCUUACCUGGCAACUUGAAGGGCAAUCCGGCCAUAAGUGGAUCCGGUCCGAAA
......(((((...)))))....(((......)))(((.(.((((((((..((((...(((.....)))....)))))))))))).).)))...... (-23.78 = -23.98 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:11 2006