Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,361,262 – 20,361,354 |
Length | 92 |
Max. P | 0.647588 |
Location | 20,361,262 – 20,361,354 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.55 |
Mean single sequence MFE | -27.58 |
Consensus MFE | -9.83 |
Energy contribution | -9.87 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -1.87 |
Structure conservation index | 0.36 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20361262 92 - 22224390 AUGUUUCAUUUGCUGGCAGUGCCGAGCAGAACAGAGCAGAA--GCCAAA--GCCUU------------UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A .(((((..(((((((((...))).))))))...)))))...--......--(((((------------(....(((((.........))))).......))))))..---------. ( -22.60) >DroSec_CAF1 8484 82 - 1 AUGUUUCAUUUGCUGGCAGUGC----------AGAGCAGAA--GCCAAA--GCCUU------------UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A .(((((((((...(((((((((----------((.(((((.--((....--)).))------------)))))))))............)))))..)))))).))).---------. ( -23.30) >DroSim_CAF1 8593 82 - 1 AUGUUUCAUUUGCUGGCAGUGC----------AGAGCAGAA--GCCAAA--GCCUU------------UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A .(((((((((...(((((((((----------((.(((((.--((....--)).))------------)))))))))............)))))..)))))).))).---------. ( -23.30) >DroEre_CAF1 8322 94 - 1 AUGUUUCAUUUGCCGGCAGAGC----------AGAGCAGAA--GCCAAA--GCCUUUGCCUUUGCCUUUGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG---------A ........((((((((((((((----------((((((((.--((....--)).)))).))))).))))))).(((((.........)))))..........)))))---------) ( -31.90) >DroAna_CAF1 26433 102 - 1 AUGUUUCAUUUGGCGUGGGCGA---GGGGAAGGGGGCAGGGGGGCAUAAGGACCUC------------UGCCUGAAUUUUAACUUUCGAUGCUGAUAAUGAAGGCGGGACGACGGCA ...(((((((..((((.((.((---(..((((.(((((((((..(....)..))))------------)))))...))))..))))).))))..)..))))))((.(.....).)). ( -36.80) >consensus AUGUUUCAUUUGCUGGCAGUGC__________AGAGCAGAA__GCCAAA__GCCUU____________UGCCUGCAUUUUAACUUUCGAUGCUGAUAAUGAAGGCAG_________A ........((((((....................))))))............................(((((.(((((((.(.......).))).)))).)))))........... ( -9.83 = -9.87 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:08 2006