Locus 8191

Sequence ID X_DroMel_CAF1
Location 20,353,536 – 20,353,642
Length 106
Max. P 0.897367
window13464

overview

Window 4

Location 20,353,536 – 20,353,642
Length 106
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 78.79
Mean single sequence MFE -37.42
Consensus MFE -20.90
Energy contribution -21.65
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -2.28
Structure conservation index 0.56
SVM decision value 1.00
SVM RNA-class probability 0.897367
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20353536 106 + 22224390
GGGCAUGUCUAAGUGCGCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCUCGAAAAAAGCGACAAAACGCG----GGUGGCGGUGGUGGGUUA
(((((((((.((((((.(((......)))))))))))))...)))))............((((((((((..(...(((......))).----..)..))..)).)))))) ( -34.00)
>DroVir_CAF1 19301 93 + 1
CGGCAUGUUUAAGUGCGCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCAA--C-----CCAAUACACGCA----CUU---GGUCUGGG---G
.((((((((.((((((.(((......)))))))))))))...))))................(((((.--.-----((((........----.))---))..))))---) ( -27.80)
>DroPse_CAF1 19785 107 + 1
GGGCAUGUCUAAGUGCUCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCUC--AAAAGGCGAGAGAUUGCUUUUUGGG-GGGGCGGAGGGUCA
(((((((((.((((((.(((......)))))))))))))...))))).....(.((.((((.((((((--(((((((((....))))))))))))-))).)))).)).). ( -51.10)
>DroGri_CAF1 15611 93 + 1
CGGCAUGUUUAAGUGCGCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCAA--C-----CAUGCAGACGCU----CUU---GGUUUGGG---G
.((((((((.((((((.(((......)))))))))))))...))))................((((((--(-----((.((....)).----..)---)).)))))---) ( -30.30)
>DroEre_CAF1 1041 103 + 1
GGGCAUGUCUAAGUGCGCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCUCGAAAAAAGCGAGAAAACGCG----GGU---GGUGGUGGGUUA
(((((((((.((((((.(((......)))))))))))))...)))))............((((((.(((..(...(((......))).----..)---..))).)))))) ( -34.30)
>DroPer_CAF1 19952 105 + 1
GGGCAUGUCUAAGUGCUCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCUC--AAAAGGCGAGAGAUUGCUUUUUGGG---GGCGGAGGGUCG
(((((((((.((((((.(((......)))))))))))))...))))).....(.((.((((.((((.(--(((((((((....))))))))))))---)))))).)).). ( -47.00)
>consensus
GGGCAUGUCUAAGUGCGCGCUUUGCCGCGGCAUUUGACAAUUUGCUCAUUAAGUUUGUCUGACCCCUC__AAAA_GCGAGAAAACGCU____GGU___GGUGGAGGGU_A
(((((((((.((((((.(((......)))))))))))))...)))))............((((((.......................................)))))) (-20.90 = -21.65 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:06 2006