Locus 8189

Sequence ID X_DroMel_CAF1
Location 20,350,952 – 20,351,069
Length 117
Max. P 0.999935
window13461

overview

Window 1

Location 20,350,952 – 20,351,069
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.30
Mean single sequence MFE -31.25
Consensus MFE -28.72
Energy contribution -28.36
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -2.86
Structure conservation index 0.92
SVM decision value 4.66
SVM RNA-class probability 0.999935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20350952 117 + 22224390
CUGUUGUCGCUGACGGCAAUAAACAAA-AAGUGCAGCAUACUUAUGCGGGCUGCAAACUGAAAAACAAAGAA--GCAGUGGCAACAAAAGCAUCGCAGCUCGUACAAAAAGAUAUUAUCU
.((((((((....))))))))......-..((((.((((....))))(((((((....((.....))..((.--((..((....))...)).)))))))))))))............... ( -34.20)
>DroSec_CAF1 18808 116 + 1
CUGUUGUCGCUGGCGGCAAUAAACAAA-AAGUGCAGCAUACUUAUGCGGGCUGCAAACUGGAAAACAAAGAA--GCAGUG-CAACAAAAGCAUCGCAGCUCGUACAAAAAAGUAUUAUCU
.((((((((....))))))))......-..((((.((((....))))(((((((..((((............--.))))(-(.......))...)))))))))))............... ( -33.62)
>DroSim_CAF1 19878 116 + 1
CUGUUGUCGCUGGCGGCAAUAAACAAA-AAGUGCAGCAUACUUAUGCGGGCUGCAAACUGGAAAACAAAGAA--GCAGUG-CAACAAAAGCAUCGCAGCUCGUACAAAAAAGUAUUAUCU
.((((((((....))))))))......-..((((.((((....))))(((((((..((((............--.))))(-(.......))...)))))))))))............... ( -33.62)
>DroEre_CAF1 15974 113 + 1
CUGUUGUCGCUGAUGGCAAUAAACAAAAAAGUGCAGCAUACUUAUGCGGGCUGCAAACUGGAAAACAAAGAA--GCAGUG-CAACAAAAGCAUCGCAGUUCGUACAA-AAAU---UAUCA
.((((((((....)))))))).........((((.((((....))))(((((((..((((............--.))))(-(.......))...)))))))))))..-....---..... ( -27.82)
>DroYak_CAF1 19538 115 + 1
CUGUUGUCGCUGACGGCAAUAAACAAA-AAGUGCAGCAUACUUAUGCGGGCUGCAAACUGGAAAACAAAGGAGAGCCGUA-CAACAAAAGCAACGCAGUUCGUGCAACAAAG---UUUCA
.((((((((....))))))))......-..(..(.((((....))))(((((((....((.....))..((....))...-.............))))))))..).......---..... ( -27.00)
>consensus
CUGUUGUCGCUGACGGCAAUAAACAAA_AAGUGCAGCAUACUUAUGCGGGCUGCAAACUGGAAAACAAAGAA__GCAGUG_CAACAAAAGCAUCGCAGCUCGUACAAAAAAGUAUUAUCU
.((((((((....)))))))).........((((.((((....))))(((((((....((.....)).......((..((....))...))...)))))))))))............... (-28.72 = -28.36 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:03 2006