Locus 8188

Sequence ID X_DroMel_CAF1
Location 20,349,835 – 20,349,952
Length 117
Max. P 0.955657
window13460

overview

Window 0

Location 20,349,835 – 20,349,952
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.36
Mean single sequence MFE -31.31
Consensus MFE -19.88
Energy contribution -19.38
Covariance contribution -0.50
Combinations/Pair 1.19
Mean z-score -2.48
Structure conservation index 0.63
SVM decision value 1.46
SVM RNA-class probability 0.955657
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20349835 117 - 22224390
UAUCUGUACAUGUAUGUACAUAUGUGCACACGCUGCGUAUACGCGUUUUUUACAACUUCCGCUCCGAAAUGAAUACAUGUGUGUACGUGUGAACCCAUAUGUAUG---AUUAUAUGCAUU
.(((.((((((((..((.(((((((((((((((.(((....)))((.....)).......))......(((....)))))))))))))))).))..)))))))))---)).......... ( -33.30)
>DroSec_CAF1 17769 112 - 1
UAUCUGUACAUGUAU--------UUGCACACGCUGCGUAUACGCGUUUUUUACAACUUCCGCUCCGAAAUGAAUACAUGUGUGUACGUGUGGACCCAUAUGUAUGAUGAUUAUGUGCAUU
....((((((((...--------..((((((((.(((....)))((.....)).......))......(((....)))))))))(((((((....)))))))........)))))))).. ( -27.90)
>DroEre_CAF1 14917 114 - 1
UAUCUGUGCA---AUGUACAUAUGUGUACACGCUGCGUAUACGCGUUUUUUACAACAUCCGCUCUGCAAUGAAUACAUAUGUGUACGUGUGAGCCUAUGUGUACU---AUUAUGUGCAUU
.........(---(((((((((...(((((((..(((....)))................((((.(((.((.((((....)))).)))))))))...))))))).---..)))))))))) ( -33.60)
>DroYak_CAF1 18540 107 - 1
UGU----------ACAUAUAUGUGUGUACACGCUGCGUAUACGCGUUUUUUACAACUUCCGCUCUGAAAGGAAUACAUAUGCGUACGUGUGAGCCUAUGUGUAUU---AUUAUGUGCAUU
.((----------(((((((.((...((((((.((((((((.(((..............)))(((....))).....)))))))))))))).)).))))))))).---............ ( -30.44)
>consensus
UAUCUGUACA___AUGUACAUAUGUGCACACGCUGCGUAUACGCGUUUUUUACAACUUCCGCUCCGAAAUGAAUACAUAUGUGUACGUGUGAACCCAUAUGUAUG___AUUAUGUGCAUU
.......................(((((((.((.(((....)))(((......)))....))..........(((((((((.((........)).)))))))))........))))))). (-19.88 = -19.38 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:02 2006