Locus 8184

Sequence ID X_DroMel_CAF1
Location 20,347,158 – 20,347,262
Length 104
Max. P 0.814961
window13449

overview

Window 9

Location 20,347,158 – 20,347,262
Length 104
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 98.41
Mean single sequence MFE -20.43
Consensus MFE -20.43
Energy contribution -20.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 1.00
SVM decision value 0.66
SVM RNA-class probability 0.814961
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20347158 104 + 22224390
CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCAUGAGCCGCACACUUAACUCCCUU-UUUCG
....(((............((((((((((...........................)))))))))).((((.....)))))))................-..... ( -20.33)
>DroSec_CAF1 15000 104 + 1
CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCCUGAGCCGCACACUUAACCCCCUU-UUUCG
....(((............((((((((((...........................)))))))))).((((.....)))))))................-..... ( -20.53)
>DroSim_CAF1 16763 104 + 1
CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCCUGAGCCGCACACUUAACCCCCUU-UUUCG
....(((............((((((((((...........................)))))))))).((((.....)))))))................-..... ( -20.53)
>DroEre_CAF1 11774 105 + 1
CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCAUGAGCCGCACACUUAACCCCCUUUUUUCG
....(((............((((((((((...........................)))))))))).((((.....)))))))...................... ( -20.33)
>consensus
CACACGGACAAACAUUCUUGGUGGUGCGCAACCGCUGACACCAACACAUAUACACCGUGCACCACCCCUUAACCCAUGAGCCGCACACUUAACCCCCUU_UUUCG
....(((............((((((((((...........................)))))))))).((((.....)))))))...................... (-20.43 = -20.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:52 2006