Locus 818

Sequence ID	X_DroMel_CAF1
Location	2,284,706 – 2,284,805
Length	99
Max. P	0.988336

overview

Window 1

Location	2,284,706 – 2,284,805
Length	99
Sequences	5
Columns	99
Reading direction	forward
Mean pairwise identity	99.19
Mean single sequence MFE	-39.56
Consensus MFE	-39.56
Energy contribution	-39.56
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.54
Structure conservation index	1.00
SVM decision value	1.26
SVM RNA-class probability	0.937300
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2284706 99 + 22224390
UGCUGCUGACUGAGGGCAGCUCCCAGCAACUGCUGCUGGUAGGCGUAGGCCGUGUACAGAUCCAUUUUGGGUAGGCCCAAGGAUCCCUGAACCGGCAAU
.((((((.......))))))..((((((.....)))))).........((((.((.(((((((...(((((....))))))))))..)).))))))... ( -39.40)
>DroSec_CAF1 13617 99 + 1
UGCUGCUGACUGAGGGCAGCUCCCAGCAACUGCUGCUGGUAGGCGUAGGCCGUGUACAGAUCCAUUUUGGGCAGGCCCAAGGAUCCCUGAACCGGCAAU
.((((((.......))))))..((((((.....)))))).........((((.((.(((((((...(((((....))))))))))..)).))))))... ( -39.60)
>DroSim_CAF1 687 99 + 1
UGCUGCUGACUGAGGGCAGCUCCCAGCAACUGCUGCUGGUAGGCGUAGGCCGUGUACAGAUCCAUUUUGGGCAGGCCCAAGGAUCCCUGAACCGGCAAU
.((((((.......))))))..((((((.....)))))).........((((.((.(((((((...(((((....))))))))))..)).))))))... ( -39.60)
>DroEre_CAF1 23572 99 + 1
UGCUGCUGACUGAGGGCAGCUCCCAGCAACUGCUGCUGGUAGGCGUAGGCCGUGUACAGAUCCAUCUUGGGCAGGCCCAAGGAUCCCUGAACCGGCAAU
.((((((.......))))))..((((((.....)))))).........((((.((.(((((((...(((((....))))))))))..)).))))))... ( -39.60)
>DroYak_CAF1 18359 99 + 1
UGCUGCUGACUGAGGGCAGCUCCCAGCAACUGCUGCUGGUAGGCGUAGGCCGUGUACAGAUCCAUUUUGGGCAGGCCCAAGGAUCCCUGAACCGGCAAU
.((((((.......))))))..((((((.....)))))).........((((.((.(((((((...(((((....))))))))))..)).))))))... ( -39.60)
>consensus
UGCUGCUGACUGAGGGCAGCUCCCAGCAACUGCUGCUGGUAGGCGUAGGCCGUGUACAGAUCCAUUUUGGGCAGGCCCAAGGAUCCCUGAACCGGCAAU
.((((((.......))))))..((((((.....)))))).........((((.((.(((((((...(((((....))))))))))..)).))))))... (-39.56 = -39.56 +  -0.00)

alignment

secondary structure

dotplot

Window 2

Location	2,284,706 – 2,284,805
Length	99
Sequences	5
Columns	99
Reading direction	reverse
Mean pairwise identity	99.19
Mean single sequence MFE	-38.64
Consensus MFE	-38.64
Energy contribution	-38.64
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.82
Structure conservation index	1.00
SVM decision value	2.12
SVM RNA-class probability	0.988336
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2284706 99 - 22224390
AUUGCCGGUUCAGGGAUCCUUGGGCCUACCCAAAAUGGAUCUGUACACGGCCUACGCCUACCAGCAGCAGUUGCUGGGAGCUGCCCUCAGUCAGCAGCA
...((((((..(.(((((((((((....)))))...)))))).))).)))).........(((((((...)))))))..(((((.........))))). ( -37.60)
>DroSec_CAF1 13617 99 - 1
AUUGCCGGUUCAGGGAUCCUUGGGCCUGCCCAAAAUGGAUCUGUACACGGCCUACGCCUACCAGCAGCAGUUGCUGGGAGCUGCCCUCAGUCAGCAGCA
...((((((..(.(((((((((((....)))))...)))))).))).)))).........(((((((...)))))))..(((((.........))))). ( -38.90)
>DroSim_CAF1 687 99 - 1
AUUGCCGGUUCAGGGAUCCUUGGGCCUGCCCAAAAUGGAUCUGUACACGGCCUACGCCUACCAGCAGCAGUUGCUGGGAGCUGCCCUCAGUCAGCAGCA
...((((((..(.(((((((((((....)))))...)))))).))).)))).........(((((((...)))))))..(((((.........))))). ( -38.90)
>DroEre_CAF1 23572 99 - 1
AUUGCCGGUUCAGGGAUCCUUGGGCCUGCCCAAGAUGGAUCUGUACACGGCCUACGCCUACCAGCAGCAGUUGCUGGGAGCUGCCCUCAGUCAGCAGCA
...((((((.((((....((((((....)))))).....)))).)).)))).........(((((((...)))))))..(((((.........))))). ( -38.90)
>DroYak_CAF1 18359 99 - 1
AUUGCCGGUUCAGGGAUCCUUGGGCCUGCCCAAAAUGGAUCUGUACACGGCCUACGCCUACCAGCAGCAGUUGCUGGGAGCUGCCCUCAGUCAGCAGCA
...((((((..(.(((((((((((....)))))...)))))).))).)))).........(((((((...)))))))..(((((.........))))). ( -38.90)
>consensus
AUUGCCGGUUCAGGGAUCCUUGGGCCUGCCCAAAAUGGAUCUGUACACGGCCUACGCCUACCAGCAGCAGUUGCUGGGAGCUGCCCUCAGUCAGCAGCA
...((((((..(.(((((((((((....)))))...)))))).))).)))).........(((((((...)))))))..(((((.........))))). (-38.64 = -38.64 +   0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:30 2006