Locus 8179

Sequence ID X_DroMel_CAF1
Location 20,343,415 – 20,343,528
Length 113
Max. P 0.886796
window13435

overview

Window 5

Location 20,343,415 – 20,343,528
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.99
Mean single sequence MFE -17.14
Consensus MFE -12.72
Energy contribution -12.72
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.74
SVM decision value 0.94
SVM RNA-class probability 0.886796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20343415 113 + 22224390
UAUGAUUUGAGUUAUGGCAUUGGAAACUAAGCAACUUGCAACACAUCACCCCAUA-C------AACCAACCAACCACCAGAGGCCUACUACUACAAUAUAUUUCGCCAUAUCUCAUCAUU
.((((..((((.((((((...(....)...((.....))................-.------.........................................)))))).)))))))). ( -18.30)
>DroSec_CAF1 11202 110 + 1
AAUGAUUUGAGUUAUGGGAUCGGAAACUAAGCAACUUGCAACACUUCACCCCACA-CACAACCAACCAAGCAACCACCAGAGGACUACC--------AUAUUUCGCCAUAUCUCAUCAU-
.((((..((((.((((((((((....)...((.....))................-.......................))((....))--------.....)).))))).))))))))- ( -16.40)
>DroSim_CAF1 12725 110 + 1
AAUGAUUUGAGUUAUGGGAUCGGAAACUAAGCAACUUGCAACACUUCACCCCACA-CACAACCAACCAAGCAACCACCAGAGGACUACC--------AUAUUUCGCCAUAUCUCAUCAU-
.((((..((((.((((((((((....)...((.....))................-.......................))((....))--------.....)).))))).))))))))- ( -16.40)
>DroEre_CAF1 7773 91 + 1
AAUGAAAUGAGUUAUGGGAGCGGAAACUAAGCAACUUGCCACAUAUCACCCCA----A--------CAAGCAACCACCA-AGCACU-------------AUUUUGCCAUAUCUCA---AA
.......((((.(((((..(((....)...((.....))..............----.--------...))......((-((....-------------..))))))))).))))---.. ( -14.50)
>DroYak_CAF1 11717 99 + 1
AAUGAAAUGAGUUAUGGGAUCGGAAACUAAGCAACCUGCCACAUAGCACCCCAUAGCA--------CAACCAACCACCAAAGCACU-------------ACUUUGCCAUAUCUCAUCAUU
(((((..(((((((((((...(....).........(((......))).)))))))).--------...........(((((....-------------.))))).......)))))))) ( -20.10)
>consensus
AAUGAUUUGAGUUAUGGGAUCGGAAACUAAGCAACUUGCAACACAUCACCCCACA_CA_____AACCAAGCAACCACCAGAGGACUAC_________AUAUUUCGCCAUAUCUCAUCAU_
.......((((.(((((....(....)...((.....))..................................................................))))).))))..... (-12.72 = -12.72 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:39 2006