| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,342,049 – 20,342,158 |
| Length | 109 |
| Max. P | 0.861200 |
| Location | 20,342,049 – 20,342,158 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.02 |
| Mean single sequence MFE | -33.26 |
| Consensus MFE | -27.27 |
| Energy contribution | -28.07 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20342049 109 - 22224390 UUAUGGCAACCGUGUGGGCAACCGGACAACGGCCCAUGACUGACCCAUUCAAUUAAGCAUGAAAAAAAGUUGCUGGAAAA-AUUGGGAGAGUGGCCGUGGAGCAGCAG----------GA .....((..((((.(((....))).)).((((((....(((..((((........((((...........))))......-..))))..))))))))))).)).....----------.. ( -33.59) >DroSec_CAF1 9898 109 - 1 UUAUGGCAACCGUGUGGGCAACCGGACAACGGCCCAUGACUGACCCAUUCAAUUAAGCAUGAAAAAAAGUUGCUGCAAAA-AUUGGGGGAGUGGCCGUGGAGCAGCAG----------GA .....((..((((.(((....))).)).((((((....(((..((((........((((...........))))......-..))))..))))))))))).)).....----------.. ( -35.59) >DroSim_CAF1 11436 93 - 1 UUAUGGCAACCGUGUGGGCAACCGGACAACGGCCCAUGACUGACUCAUUCAAUUAAGCAUGAAAAAAAGUUGCUGGAACA-AUUGGGGGAGUGG-------------------------- ((((((...((((.(((....)))....)))).))))))...((((.(((((((.((((...........)))).....)-)))))).))))..-------------------------- ( -25.40) >DroEre_CAF1 6362 108 - 1 UUAUGGCAACCGUGUGGGCAACCGGACAACGGCCCAUGACUGACCCAUUCAAUUAAGCAUGAAAAAAAGUUGUUGAAAAAA--UGGGGGAGUGGCCGUGGAGGAGCAC----------GA .....((..((((.(((....))).)).((((((....(((..((((((......((((...........)))).....))--))))..)))))))))...)).))..----------.. ( -34.60) >DroYak_CAF1 10369 120 - 1 UUAUGGCAACCGUGUGGGCAACCGGACUACGGCCCAUGACUGACCCAUUCAAUUAAGCAUGAAAAAAAGUUGUUCAAAAAAAUUGGGGGAGUGGCCGUGGAGGAGCAGGACGCGGCAGGA .........((((((((....))...((((((((....(((..((((........((((...........)))).........))))..))))))))))).........))))))..... ( -37.13) >consensus UUAUGGCAACCGUGUGGGCAACCGGACAACGGCCCAUGACUGACCCAUUCAAUUAAGCAUGAAAAAAAGUUGCUGAAAAA_AUUGGGGGAGUGGCCGUGGAGCAGCAG__________GA .....((....((.(((....))).)).((((((....(((..((((........((((...........)))).........))))..)))))))))......)).............. (-27.27 = -28.07 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:38 2006