Locus 8174

Sequence ID X_DroMel_CAF1
Location 20,339,122 – 20,339,217
Length 95
Max. P 0.624303
window13426

overview

Window 6

Location 20,339,122 – 20,339,217
Length 95
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 82.19
Mean single sequence MFE -30.12
Consensus MFE -24.30
Energy contribution -24.30
Covariance contribution 0.01
Combinations/Pair 1.16
Mean z-score -1.52
Structure conservation index 0.81
SVM decision value 0.19
SVM RNA-class probability 0.624303
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20339122 95 - 22224390
GAUUUCUGGUCUACUUCCACUGUCAAUCAUUUAGCCCAUUUGAAGUUCAUUGGAGCAGUGCCUCGGCUGCAAUGCGCUGGUGCCUCCAGGGGCUU----
(((...(((.......)))..)))........(((((...((.....))((((((..(..((...((......))...))..)))))))))))).---- ( -26.60)
>DroSec_CAF1 6701 94 - 1
--ACUCUGGGCUUCCCCCACUGUCAAC---ACAGCCCAUUUGAAGUUCACUGGAGCAGCUCCUCGGCUGCAAUGUGCUGGUGCCUCCAGCGGCUUCCAC
--....((((((((.....((((....---)))).......)))))))).((((((((((....))))))....((((((.....))))))...)))). ( -31.30)
>DroSim_CAF1 7771 94 - 1
--ACUCAGGGCUGCUUCCACUGUCAAU---AUAGCCCUUUUGAAGUUCACUGGAGCAGUUCCUCGGCUGCAAUGUGCUGGUGCCUCCAGUGGCUUCCAC
--....(((((((..............---.)))))))...(((((.((((((((((.....(((((........))))))).)))))))))))))... ( -32.46)
>consensus
__ACUCUGGGCUACUUCCACUGUCAAU___AUAGCCCAUUUGAAGUUCACUGGAGCAGUUCCUCGGCUGCAAUGUGCUGGUGCCUCCAGCGGCUUCCAC
......(((((((..................)))))))...(((((.(.((((((((((......))))).....((....)).))))).))))))... (-24.30 = -24.30 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:31 2006