Locus 8171

Sequence ID X_DroMel_CAF1
Location 20,328,480 – 20,328,571
Length 91
Max. P 0.875801
window13422

overview

Window 2

Location 20,328,480 – 20,328,571
Length 91
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 80.16
Mean single sequence MFE -23.50
Consensus MFE -14.80
Energy contribution -14.64
Covariance contribution -0.16
Combinations/Pair 1.26
Mean z-score -2.08
Structure conservation index 0.63
SVM decision value 0.89
SVM RNA-class probability 0.875801
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20328480 91 + 22224390
UAUAUGGAAGAUGGCAUCGGAAGAUGCUCCACACUCCAACACACUCAACA---GUAU--------GCGAAUGAAAAUCGUUUACAUUGUUUGUACCCGCACU
....((((....((((((....))))))......))))..(((..(((..---(((.--------((((.(....))))).))).)))..)))......... ( -22.00)
>DroSec_CAF1 29840 80 + 1
UAUAUGGAAU-UCGCAUCGGAAGGUGCGCCAC----------ACUCAGCA---GUAU--------GCGGAUGAAAAUCCUUCACAUUGUUUGUACCCGCACU
.....((...-.((((((....))))))..((----------(...((((---((.(--------(.((((....))))..)).)))))))))..))..... ( -22.80)
>DroSim_CAF1 28130 80 + 1
UAUAUGGAAC-UCGCAUCGGAAGGUGCGCCAC----------ACUCAGCA---GUAU--------GCGGAUGAAAAUCCUUCACAUUGUUUGUACCCGCACU
.....((...-.((((((....))))))..((----------(...((((---((.(--------(.((((....))))..)).)))))))))..))..... ( -22.80)
>DroEre_CAF1 6178 83 + 1
UAUGUGGAAA-UCGCAUCGAAAGACGCUCCAC----------ACUCAACACUAGUAU--------GCGGAUGAAAAUCCUUUACAUUGCUUGUACCCGCACU
..((((((..-..((.((....)).)))))))----------).............(--------((((((....))))..((((.....))))...))).. ( -22.70)
>DroYak_CAF1 5920 91 + 1
UAUAUGGAAC-UCGCAUCGGAGGAUGCCUCAC----------ACUCAACACUUGUGUGUGAAAGUGUGGAUGAAAAUCCUUCACAUUGUUUGUGCCCGCACU
......((((-..(((((....))))).((((----------((.((.....)).))))))..(((.((((....))))..)))...))))(((....))). ( -27.20)
>consensus
UAUAUGGAAC_UCGCAUCGGAAGAUGCGCCAC__________ACUCAACA___GUAU________GCGGAUGAAAAUCCUUCACAUUGUUUGUACCCGCACU
....(((.....((((((....)))))))))..................................((((..(((.....)))(((.....)))..))))... (-14.80 = -14.64 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:27 2006