Locus 8170

Sequence ID X_DroMel_CAF1
Location 20,328,374 – 20,328,468
Length 94
Max. P 0.555126
window13421

overview

Window 1

Location 20,328,374 – 20,328,468
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.79
Mean single sequence MFE -22.48
Consensus MFE -12.95
Energy contribution -13.20
Covariance contribution 0.25
Combinations/Pair 1.19
Mean z-score -1.84
Structure conservation index 0.58
SVM decision value 0.04
SVM RNA-class probability 0.555126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20328374 94 - 22224390
--------CCACAAAAAUCCUGCAAUC-----CCAAGAUGUGCGACACACGCGCCCUGAUCAACACCAAACAGACCAGCGAUCUGCACAGUUGUUGGAUUAUAUAUA
--------.......(((((.(((((.-----...(((((((((.....)))))((((.((...........)).))).))))).....))))).)))))....... ( -19.70)
>DroVir_CAF1 4828 100 - 1
CAAAUCGAAAGCAAACUCGCAACAA-------UCAACAUGUGCGACACGCGCGCCCUGAUCACCACCAAGCAGACGAACGAUCUGCACAGUUGCUGGAUCAUUUAUA
.....(....)....((.(((((.(-------(((...((((((...))))))...)))).........((((((....).)))))...))))).)).......... ( -22.80)
>DroPse_CAF1 17389 98 - 1
--------CCACAGGA-ACCGGGAACCAAGGACCAAAAUGUGCGACACGCGGGCUCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA
--------........-.....((.((((.(((.....((((((...((..((.((((............))))))..))...))))))))).)))).))....... ( -23.00)
>DroEre_CAF1 6072 94 - 1
--------AUACAAAGAUCCUGGAAUC-----UCAAGAUGUGCGAUACACGCGCCCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA
--------.......((((..((.(((-----....)))(((((.....))))))).))))...........(((((((((.((....))))))))).))....... ( -22.70)
>DroYak_CAF1 5809 94 - 1
--------AUACAAAGAUCCUGGAAUC-----CCAAGAUGUGCGACACACGCGCCCUGAUCACCACCAAACAGACCAGCGAUCUGCACAGUUGCUGGAUCAUAUAUA
--------.......((((..((.(((-----....)))(((((.....))))))).))))...........(((((((((.((....))))))))).))....... ( -24.40)
>DroPer_CAF1 17367 91 - 1
--------CCACAGGA-ACCAGGAAC-------CAAAAUGUGCGACACGCGGGCUCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA
--------......((-.((((.(((-------.....((((((...((..((.((((............))))))..))...))))))))).)))).))....... ( -22.30)
>consensus
________ACACAAAAAUCCUGGAAUC_____CCAAGAUGUGCGACACACGCGCCCUGAUCAACACCAAACAGACCAACGAUCUGCACAGUUGUUGGAUCAUAUAUA
.......................................(((((.....)))))..................(((((((((.((....))))))))).))....... (-12.95 = -13.20 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:27 2006