Locus 8169

Sequence ID X_DroMel_CAF1
Location 20,324,472 – 20,324,573
Length 101
Max. P 0.955519
window13420

overview

Window 0

Location 20,324,472 – 20,324,573
Length 101
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 67.24
Mean single sequence MFE -25.87
Consensus MFE -17.15
Energy contribution -16.35
Covariance contribution -0.80
Combinations/Pair 1.42
Mean z-score -1.60
Structure conservation index 0.66
SVM decision value 1.46
SVM RNA-class probability 0.955519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20324472 101 + 22224390
---GUACAGACAAUAUACA--UG-UUCCAUUGCA-UUCCAGGCAACUUUGGCACGGCCGUACUGAACAACAAACUGUUCAUCGUGGGCGGAGCGUACGAUGUCUUUUU
---....(((((......(--((-((((..(((.-....((....))...)))..(((.(((((((((......))))))..)))))))))))))....))))).... ( -28.40)
>DroVir_CAF1 1051 89 + 1
--------CG-------AA--CUAACACAUC-CC-UUGCAGGCAAUUUUGGCACUGCCGUUCUGAACAACGAACUCUUCAUUGUGGGUGGUGCUUACGAUGUGUGCCU
--------..-------..--...(((((((-((-.....)).......(((((..((((((........)))).(........)))..)))))...))))))).... ( -24.20)
>DroEre_CAF1 2096 105 + 1
AAUAUUU-UCUUAUGCAGACUUG-UUCCAUUGCA-UUCCAGGCAAUUUUGGCACAGCCGUUCUGAACAACAAACUAUUCAUCGUGGGCGGAGCCUACGAUGUCUGCUU
.......-......(((((((((-(((.(((((.-......)))))...(((...))).....))))))..........(((((((((...))))))))))))))).. ( -33.10)
>DroWil_CAF1 1129 94 + 1
------U-AAGAAUAU--U--UC-UUGUAUUG-A-UUAUAGGUAACUUUGGCACUGCCGUCCUUAAUAACGAGCUCUUCAUUGUGGGCGGUGCCUAUGAUGUGUGUCU
------.-........--.--.(-(((((...-.-.)))))).......(((((.(((((........))).))....(((..(((((...)))))..))).))))). ( -22.50)
>DroYak_CAF1 1953 80 + 1
----------------------------AUUUCAUUUCCAGGCAACUUUGGCACUGCCGUUCUGAACAACAAACUGUUCAUCGUGGGUGGAGCCUACGAUGUCUGCCU
----------------------------...........(((((((...(((...))).....(((((......)))))((((((((.....)))))))))).))))) ( -24.90)
>DroMoj_CAF1 5087 92 + 1
----UCU-CU-------CA--UU-AUCCAUCACC-CAACAGGUAAUUUCGGCACAGCCGUGCUCAACAACGAGCUCUUCAUAGUGGGCGGCGCCUAUGACGUCUGCCU
----...-..-------((--((-((.....(((-.....))).....((((...)))).((((......)))).....))))))(((((((.......)).))))). ( -22.10)
>consensus
______U_CA________A__UG_UUCCAUUGCA_UUCCAGGCAACUUUGGCACUGCCGUUCUGAACAACAAACUCUUCAUCGUGGGCGGAGCCUACGAUGUCUGCCU
.......................................(((((....((((...))))...................((((((((((...))))))))))..))))) (-17.15 = -16.35 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:26 2006