Locus 8168

Sequence ID X_DroMel_CAF1
Location 20,323,070 – 20,323,170
Length 100
Max. P 0.798114
window13419

overview

Window 9

Location 20,323,070 – 20,323,170
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 79.53
Mean single sequence MFE -27.20
Consensus MFE -18.36
Energy contribution -18.80
Covariance contribution 0.44
Combinations/Pair 1.17
Mean z-score -1.85
Structure conservation index 0.68
SVM decision value 0.61
SVM RNA-class probability 0.798114
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20323070 100 + 22224390
AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAGUUUGGCUAGUUGGCCAGUUGGCCAUUUGGCCAUUUUGCGAGCUCGUGUUAAUUAUAUAUCG
((((((...(((((((..(((((((....))))))).....(((((((.(((((....))))).)))))))...)))))))))).)))............ ( -38.30)
>DroSec_CAF1 24629 84 + 1
AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAAUUUGGCCAGUUGGCCA----------------UUUGGUGAGCUCGUGUUAAUUAUAUAUCG
((((((...((((((...(((((((....)))))))(((..(((((....)))))----------------.)))))))))))).)))............ ( -26.40)
>DroSim_CAF1 21926 84 + 1
AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAAUUUGGCCAGUUGGCCA----------------CUUGGUGAGCUCGUGUUAAUUAUAUAUCG
((((((...((((((...(((((((....)))))))(((..(((((....)))))----------------.)))))))))))).)))............ ( -25.40)
>DroYak_CAF1 531 76 + 1
AACCGGAUUGUUCGAAUCCUAAACGCGACGGUGUGGCAAUUUGGCCAUUUGG------------------------CGAGUUCGUGUUAAUUAUAAAUCA
....(((((.....)))))..((((((((.(((((((......)))))...)------------------------)..).)))))))............ ( -18.70)
>consensus
AACCGGAUUGCUCGCAUCCUAAACUCGGCGGUUUGGCAAUUUGGCCAGUUGGCCA________________UUUGGCGAGCUCGUGUUAAUUAUAUAUCG
((((((...((((((...((((((......)))))).....(((((....)))))....................))))))))).)))............ (-18.36 = -18.80 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:25 2006