Locus 8167

Sequence ID X_DroMel_CAF1
Location 20,322,751 – 20,322,861
Length 110
Max. P 0.522375
window13418

overview

Window 8

Location 20,322,751 – 20,322,861
Length 110
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 84.28
Mean single sequence MFE -31.97
Consensus MFE -25.43
Energy contribution -26.77
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.80
SVM decision value -0.02
SVM RNA-class probability 0.522375
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20322751 110 + 22224390
CACCGAUUCAAGGUAGGACCCCACCCACACCAUUAUAGAUCCGAGCAAUAGCUACAUGGAACAGCCCCAUCUGUG-GAUCUGCUUCAGAGAUCGUGCCACAUCUGUGGGAU
.(((.......))).........(((((.......(((((((((((....)))..((((.......))))...))-))))))......((((.(.....)))))))))).. ( -26.60)
>DroSec_CAF1 24311 96 + 1
CACCGAUUCAAGGUAGGAUCCCUCA---------------CCGAGCAACAGCUACUUGGAGCAGCCCCACCUAUGGGAUCUGCUUCAGAGAUGGUGCCACAUCUGUGGGAU
(((((.(((..((((((...))).)---------------)).(((....)))...((((((((.((((....))))..))))))))))).)))))((((....))))... ( -35.60)
>DroSim_CAF1 21608 96 + 1
CACCGAUUCAAGGUAGGAUCCCUCA---------------CCGAGCAACAGCUACUUGGAGCAGCCCCACCUAUGGGAUCUGCUUCAGAGAUCGUGCCACAUCUGUGGGAU
(((.(((....((((.((((.....---------------...(((....)))..(((((((((.((((....))))..))))))))).)))).))))..))).))).... ( -33.70)
>consensus
CACCGAUUCAAGGUAGGAUCCCUCA_______________CCGAGCAACAGCUACUUGGAGCAGCCCCACCUAUGGGAUCUGCUUCAGAGAUCGUGCCACAUCUGUGGGAU
(((.(((....((((.((((.(.....................(((....)))...((((((((.((((....))))..))))))))).)))).))))..))).))).... (-25.43 = -26.77 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:24 2006