Locus 8166

Sequence ID X_DroMel_CAF1
Location 20,321,383 – 20,321,502
Length 119
Max. P 0.882807
window13417

overview

Window 7

Location 20,321,383 – 20,321,502
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -35.04
Consensus MFE -23.99
Energy contribution -24.55
Covariance contribution 0.57
Combinations/Pair 1.16
Mean z-score -2.08
Structure conservation index 0.68
SVM decision value 0.92
SVM RNA-class probability 0.882807
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20321383 119 + 22224390
CGGCCGAUGC-CACGCAGGCUAUCGAUGUUUUCAUGCCUGGACGUAUGUCGAUACUUUGCAGCAGCUUAUCGGCUUAUGCUGCGAUAUCACCACUGGACGAAACUUUGGCCAUUAGUUAA
.(((((((((-(.....))).)))...(((((....((.((((....)))((((..(((((((((((....)))...))))))))))))....).))..)))))...))))......... ( -36.40)
>DroEre_CAF1 44708 119 + 1
CGGCCGAUGCUCAUGCUG-AUAUCGAUGUUUUCGUGCCUCGACACUUAUCGAUACUGUGCAGCAGACUAUCGGCUUUUGUUGCGAUAUCACCACUGCGCACCACUUUGGGCAUUUGUCAA
.(((.((((((((...((-.((((((((...(((.....)))....)))))))).(((((((..((.(((((.(.......))))))))....))))))).))...)))))))).))).. ( -37.30)
>DroYak_CAF1 44639 117 + 1
CGGCCGAUGCUCAUGCAU-AUAUCGAUGUUUUCA--CCUUGACCCUUAUCGAUACCGUGCAGAAAACUAUCGGCCUUCGCUGCGAUAUCACCACUACCCACCACUUUGGUCAUUUGUCAA
.((((((((....(((((-.((((((((...((.--....))....))))))))..)))))......))))))))........((((..((((.............))))....)))).. ( -31.42)
>consensus
CGGCCGAUGCUCAUGCAG_AUAUCGAUGUUUUCAUGCCUCGACACUUAUCGAUACUGUGCAGCAGACUAUCGGCUUUUGCUGCGAUAUCACCACUGCACACCACUUUGGCCAUUUGUCAA
.((((((((....(((((..((((((((...(((.....)))....))))))))..)))))......))))))))........((((...(((.............))).....)))).. (-23.99 = -24.55 +   0.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:23 2006