Locus 8164

Sequence ID X_DroMel_CAF1
Location 20,317,761 – 20,317,855
Length 94
Max. P 0.905774
window13414

overview

Window 4

Location 20,317,761 – 20,317,855
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 97.16
Mean single sequence MFE -19.27
Consensus MFE -18.48
Energy contribution -18.70
Covariance contribution 0.22
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.96
SVM decision value 1.04
SVM RNA-class probability 0.905774
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20317761 94 + 22224390
ACGUUGUAAUUUUCACGCGACUUGCAACAAAGCCAAACAAAGCAACAAAACGAACAAUGGCCAGUCGUUGACAAAUGUUUGAGCUUAAUUAACC
..(((((((.((......)).))))))).((((((((((......(.....)..((((((....)))))).....)))))).))))........ ( -18.80)
>DroEre_CAF1 40926 94 + 1
ACGUUGUAAUUUUCACGCGACUUGCAACAAAGCCAAACAAAGCAACAAAAAGAACAAUGGCCAGCCGUUGACAAAUGUUUGAGCUUAAUUAACC
..(((((((.((......)).))))))).((((((((((......(.....)..((((((....)))))).....)))))).))))........ ( -21.50)
>DroYak_CAF1 40942 94 + 1
ACGUUGUAAUUUUCACGCGACUUGCAACAAAGCCAAACAAAGCAACAAAAAGAACAAUGACUAGCCGUUGACAAAUGUUUGAGCUUAAUUAACC
..(((((((.((......)).))))))).((((((((((......(.....)..(((((......))))).....)))))).))))........ ( -17.50)
>consensus
ACGUUGUAAUUUUCACGCGACUUGCAACAAAGCCAAACAAAGCAACAAAAAGAACAAUGGCCAGCCGUUGACAAAUGUUUGAGCUUAAUUAACC
..(((((((.((......)).))))))).((((((((((......(.....)..((((((....)))))).....)))))).))))........ (-18.48 = -18.70 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:20 2006