Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,312,088 – 20,312,191 |
Length | 103 |
Max. P | 0.634586 |
Location | 20,312,088 – 20,312,191 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.69 |
Mean single sequence MFE | -20.37 |
Consensus MFE | -17.74 |
Energy contribution | -17.63 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.61 |
Structure conservation index | 0.87 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20312088 103 - 22224390 UCC-------CUCUCUCAUUGCCUCUCGCUCGUUCUUCCUUUCUAUCCGAAUCCCUCAGUCUUCGCUACUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA ...-------............((.((((....((((((........((((..(....)..))))........((((.((....))..)))))))))).)))).)).... ( -19.90) >DroEre_CAF1 36709 103 - 1 UCC-------CUCACUCAUCCCCUCUCGCUAGUUCUUCCUUUCUCGCCGAAUCCCUCAGACUUCUCUAUUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA ...-------............((.((((....((((((.........(((......((....)).....)))((((.((....))..)))))))))).)))).)).... ( -18.80) >DroYak_CAF1 36796 110 - 1 UCCCUUCUGCCUCUCUCAUUCCCUCACGCACGUUCUUCCAUUCCCCGCGAAUCCCUCAGACUUCUCUAUUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA .....((((....((.(((..((((.((((.(((.((.((((....(((((......((....)).....))))))))).)).)))...))))))))))).))))))... ( -22.40) >consensus UCC_______CUCUCUCAUUCCCUCUCGCUCGUUCUUCCUUUCUCCCCGAAUCCCUCAGACUUCUCUAUUUUCGCAAUGUAACGACUUUUGCGGAGGAUGCGACAGAUAA ......................((.((((....((((((.........(((......(((....)))...)))((((.((....))..)))))))))).)))).)).... (-17.74 = -17.63 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:19 2006