| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,307,888 – 20,308,007 |
| Length | 119 |
| Max. P | 0.604917 |
| Location | 20,307,888 – 20,308,007 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.86 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.79 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20307888 119 - 22224390 CUACACGAACGAUCAUUAAUCAUACUCGAAGAAUUCAGAUAAUGAUUGAAAAAACCGAAUGCAUAUGUACAUAUGUACGUGUGGCUUAAAUAAACAAUACACAUAUGUACAUAUGUGGG .........(((((((((.((................)))))))))))......((....((((((((((((((((...(((...........)))....)))))))))))))))))). ( -30.29) >DroEre_CAF1 32551 109 - 1 CUACACGAACGAUCAUUCAUCAUACUCGAAGAAUUCAGAUAAUGAUUGAAAAAACCGAAUACAGAAU--AAUACAGACGUGUGGCUUAAAUAAACAAUACAUAU--------AUGUGGG (((((((..((((((((.(((................))))))))))).......(.......)...--........))))))).............((((...--------.)))).. ( -15.09) >DroYak_CAF1 32654 99 - 1 CUACACGAACGAUCAUUAAUCAUACUCGAAGAAUUCAGAUAAUGAUUGAAAAAACCGAAUA------------CAUACGUGUGGCUUAAAUAAACAAUACAUAU--------AUGUGGG .........(((((((((.((................)))))))))))...........((------------((((..((((..............))))..)--------))))).. ( -14.93) >consensus CUACACGAACGAUCAUUAAUCAUACUCGAAGAAUUCAGAUAAUGAUUGAAAAAACCGAAUACA_A_____AUACAUACGUGUGGCUUAAAUAAACAAUACAUAU________AUGUGGG (((((((..((((((((.(((................)))))))))))........(....)...............)))))))...............(((((((....))))))).. (-16.34 = -16.79 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:19 2006