| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,307,011 – 20,307,106 |
| Length | 95 |
| Max. P | 0.684377 |
| Location | 20,307,011 – 20,307,106 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.72 |
| Mean single sequence MFE | -16.57 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20307011 95 + 22224390 UAAUCUAAUUUCUGACAACUGACGGGCAAAUCAAUAAAUGAAGUGGAAAAUGGAAACAUUUUCUUCGUCUUCUU----UCGCUCUCCUUCUCCUCUUCC .............((.....((((((((..(((.....)))..))(((((((....))))))))))))).....----))................... ( -16.70) >DroEre_CAF1 31368 92 + 1 UAAUCUAAUUUCUGACAACUGACGGGCAAAUCAAUAAAUGAAGUGGAAAAUGGAAACAUUUUCUUCGUCUUCUU----UCGCUUC---UUUCCUCUUCC .............((.....((((((((..(((.....)))..))(((((((....))))))))))))).....----)).....---........... ( -16.70) >DroYak_CAF1 31520 96 + 1 UAAUCUAAUUUCUGACAACUGACGGGCAAAUCAAUAAAUGAAGUGGAAAAUGGAAACAUUUUCUUCGUCUUCUUCGCUUCGCUUU---CUUCCUCUACC ....................((((((((..(((.....)))..))(((((((....)))))))))))))................---........... ( -16.30) >consensus UAAUCUAAUUUCUGACAACUGACGGGCAAAUCAAUAAAUGAAGUGGAAAAUGGAAACAUUUUCUUCGUCUUCUU____UCGCUUU___UUUCCUCUUCC ....................((((((((..(((.....)))..))(((((((....))))))))))))).............................. (-16.30 = -16.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:18 2006