| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,306,070 – 20,306,174 |
| Length | 104 |
| Max. P | 0.500000 |
| Location | 20,306,070 – 20,306,174 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 93.25 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -28.35 |
| Energy contribution | -28.47 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20306070 104 - 22224390 AUAUGGGCUCGGUGUGCAUAAUAC-------ACGGGCGUGAUGUUUGUCGAAUCCGAUCGCAUCGGCAAUCGGUCUUUGAUGUGCGUCUGCCACAAUAUUUUCCAUAUUCU (((((((((((((((.....))))-------.)))))..(((((.(((((((.(((((.((....)).)))))..))))))).)))))..............))))))... ( -35.40) >DroEre_CAF1 30438 110 - 1 -UAUGGGUUCGGUGUGCAUAAUACACGGUACACGGGCGUGAUGUUUGUCGAAUCCGAUCGCAUCGGCAAUCGGUCUUUGAUGUGCGUCUGCCACAAUAUUUUUCAUAUUCU -((((((....((((((..........)))))).((((.(((((.(((((((.(((((.((....)).)))))..))))))).))))))))).........)))))).... ( -34.90) >DroYak_CAF1 30638 104 - 1 AUAUGGGUUCGGUGUGCAUAAUAC-------ACGGGCGUGAUGUUUGUCGAAUCCGAUCGCAUCGGCAAUCAGUCUUUGAUGUGCGUCUGCCACAAUAUUUUUCAUAUUCU (((((((....(((((.....)))-------)).((((.(((((.(((((((..((((.((....)).))).)..))))))).))))))))).........)))))))... ( -27.40) >consensus AUAUGGGUUCGGUGUGCAUAAUAC_______ACGGGCGUGAUGUUUGUCGAAUCCGAUCGCAUCGGCAAUCGGUCUUUGAUGUGCGUCUGCCACAAUAUUUUUCAUAUUCU .((((((....((((.....))))..........((((.(((((.(((((((.(((((.((....)).)))))..))))))).))))))))).........)))))).... (-28.35 = -28.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:17 2006