Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,266,493 – 2,266,592 |
Length | 99 |
Max. P | 0.889161 |
Location | 2,266,493 – 2,266,592 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 73.20 |
Mean single sequence MFE | -42.02 |
Consensus MFE | -26.45 |
Energy contribution | -25.45 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.26 |
Mean z-score | -1.77 |
Structure conservation index | 0.63 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.889161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2266493 99 - 22224390 GCGCUGAGGGGCCUGGCUCCGUUGGAUCCCUUUCUGGGCCAGCCGCGCUAUAUUGUAGGCUCGGGUGCAGGAGUUAACAAACUCAAGCAGCGUAGACUG ((((((((((..(..((...))..)..))))..(((.(((((((..((......)).))))..))).)))(((((....)))))...))))))...... ( -39.40) >DroVir_CAF1 31570 87 - 1 GCGCUGCGCGGUCUGCUGCCGCUGGAUCCGUUUCUGGAGCAGCCGCGCUAUAUGGCUGCCAC----GCAGC--------AGCUGCGGCAGCGCAAGCUG (((((((((((.(((((((..(..((......))..).(((((((.......)))))))...----)))))--------)))))).)))))))...... ( -49.80) >DroGri_CAF1 27872 87 - 1 GCGUUGCGCGGCCUGCUGCCACUGGAUCCGUUUCUGGAGCAGCCCCGCUAUAUGGCGGCCAC----ACAGC--------AGCUCAAGCAGCGACGACUG .(((((((.((((.(((((..(..((......))..).)))))...(((....))))))).)----.....--------.((....)).)))))).... ( -34.40) >DroSec_CAF1 20989 99 - 1 GCGCUGAGGGGCCUGGCUCCGUUGGAUCCCUUUCUGGGCCAGCCGCGCUACAUAGUGGGCUCGGGUGCAGGAGUUACCAAACUCAAGCAGCGCAGACUG ((((((((((..(..((...))..)..))))..(((.(((((((.((((....))))))))..))).)))(((((....)))))...))))))...... ( -44.50) >consensus GCGCUGAGCGGCCUGCCGCCGCUGGAUCCCUUUCUGGACCAGCCGCGCUAUAUGGCGGCCAC____GCAGC________AACUCAAGCAGCGCAGACUG ((((((((.((.(((((.(((..(((.....))))))))))))).)((......))..............................)))))))...... (-26.45 = -25.45 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:27 2006