| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,282,484 – 20,282,590 |
| Length | 106 |
| Max. P | 0.704398 |
| Location | 20,282,484 – 20,282,590 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.29 |
| Mean single sequence MFE | -23.76 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.76 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20282484 106 - 22224390 UAAUAUGGC-------UA-AAAGCAGGCAGUCUGCUUAUAUCGCGUUUUAAAGAACCUGACAAAAAACAUAGUUAAAAAUAGCUCCUAGUGCAGAUUGCUGCGACAAGACCAAC .....((((-------(.-...((((.((((((((.....(((.((((....)))).)))..........(((((....)))))......))))))))))))....)).))).. ( -27.10) >DroSec_CAF1 12388 103 - 1 UAAUAUGGC-------UA-AAAGCAGACAGUCUGCUUAUAUCGCGUUUUAAAGAACCUGACAAAAAACAUAGUUU---AUAGCUCCUAGUGCAGAUUGCUGCGACAAGACCACC .....((((-------(.-...((((.((((((((.....(((.((((....)))).)))..........(((..---...)))......))))))))))))....)).))).. ( -25.20) >DroSim_CAF1 14761 103 - 1 UAAUAUGGC-------UA-AAGGCAGACAGUCUGCUUAUAUCGCGUUUUAAAGAACCUGACAAAAAACAUAGUUU---AUAGCUCCUAGUGCAGAUUGCUGCGACAAGACCACC .....((((-------(.-...((((.((((((((.....(((.((((....)))).)))..........(((..---...)))......))))))))))))....)).))).. ( -24.10) >DroEre_CAF1 7053 105 - 1 UAAUAUGGACUGUAAUUAUGGAAAAGACAGUCCGCUUAAAUCGCGUUUCAAAGAACCUGAC------CUUAGUUU---AUAACUCUUAAUGCAGAUUGCUGCGACAAGACCACC ......(((((((..((.....))..)))))))(((....(((.((((....)))).))).------...)))..---.....((((..(((((....)))))..))))..... ( -20.70) >DroYak_CAF1 7063 103 - 1 UAGUAUGGU-------UA-AAAGCAGACAGUCUGCUUAUAUCGCGUUUUGAAAAACCUGACGAAAAACUUAGUUU---AUAGCUCCUAAUGCAGAUUACUGCGACAAGACCACC .....((((-------(.-...((((..(((((((.....(((((..((....))..)).))).......(((..---...)))......))))))).)))).....))))).. ( -21.70) >consensus UAAUAUGGC_______UA_AAAGCAGACAGUCUGCUUAUAUCGCGUUUUAAAGAACCUGACAAAAAACAUAGUUU___AUAGCUCCUAGUGCAGAUUGCUGCGACAAGACCACC ......................((((.((((((((.....(((.((((....)))).)))..........((((......))))......))))))))))))............ (-18.28 = -18.76 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:12 2006