Locus 8155

Sequence ID X_DroMel_CAF1
Location 20,277,479 – 20,277,572
Length 93
Max. P 0.928570
window13402

overview

Window 2

Location 20,277,479 – 20,277,572
Length 93
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 75.29
Mean single sequence MFE -17.02
Consensus MFE -10.95
Energy contribution -10.73
Covariance contribution -0.22
Combinations/Pair 1.35
Mean z-score -1.72
Structure conservation index 0.64
SVM decision value 1.19
SVM RNA-class probability 0.928570
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20277479 93 + 22224390
-ACUCUUUGUAAAUGUACCUUUUCCCGGCCAAAGA--GGAGGUGGAUGACACCUUGGCUC-------CACUUUAUCUCAAUUAAAAAAAAAAAAACCACAUAU
-.(((((((....................))))))--)((((((((...(.....)..))-------)))))).............................. ( -14.95)
>DroPse_CAF1 15883 93 + 1
CAAUCUUUGUAAAUGUACCUUUUCUCAGACCAGAG--CCGGGUAUAAAUCAUCU--GCUUUUUAUCUGAUUUUAUCUCAAUUACAAGUA--CAUACCAU----
.....(((((((.((.........(((((..((((--(.((((.......))))--)))))...)))))........)).)))))))..--........---- ( -14.73)
>DroSec_CAF1 7495 78 + 1
-ACUCUUUGUAAAUGUACCUUUCCCCGGCCAAAGA--GAAGGUGGACGACACCUUGGCUC-------CACUUUAUCUCAAUUACAAAA---------------
-....(((((((.((...........(((((....--..(((((.....)))))))))).-------..........)).))))))).--------------- ( -17.75)
>DroSim_CAF1 9910 78 + 1
-ACUCUUUGUAAAUGUACCUUUCCCCGGCCAAAGA--GAAGGUGGACGACACCUUGGCUC-------CACUUUAUCUCAAUUACAAAA---------------
-....(((((((.((...........(((((....--..(((((.....)))))))))).-------..........)).))))))).--------------- ( -17.75)
>DroEre_CAF1 2018 88 + 1
-ACUCUUUGUAAAUGUACCUUUCC-CGGCCAAAAAAGGGAGGUGGACGACACCUCGGCUC-------CACUUUAUCUCAAUUACGAAU------ACCACAUAU
-....(((((((.((..(((((..-........)))))(((((((((((....)))..))-------))))))....)).))))))).------......... ( -18.10)
>DroYak_CAF1 2101 87 + 1
-ACUCUUUGUAAAUGUACCUUUCCGCGGCCAAAAA--GGAGGUGGACGACACCUCGGCUC-------CACUUUAUCUCAAUUACAAAU------ACCACAUAU
-....(((((((.((...........((((.....--.((((((.....)))))))))).-------..........)).))))))).------......... ( -18.85)
>consensus
_ACUCUUUGUAAAUGUACCUUUCCCCGGCCAAAAA__GGAGGUGGACGACACCUUGGCUC_______CACUUUAUCUCAAUUACAAAA______ACCAC____
.....(((((((.((..((.......))..........((((((.....))))))......................)).)))))))................ (-10.95 = -10.73 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:10 2006