Locus 8152

Sequence ID X_DroMel_CAF1
Location 20,273,067 – 20,273,187
Length 120
Max. P 0.752001
window13396

overview

Window 6

Location 20,273,067 – 20,273,187
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.83
Mean single sequence MFE -58.35
Consensus MFE -44.25
Energy contribution -45.88
Covariance contribution 1.62
Combinations/Pair 1.05
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 0.48
SVM RNA-class probability 0.752001
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20273067 120 - 22224390
CACCUUCGGGAAAGUGAAUGGGCGGCCGCUGGACGCCGUCCUGUCCCACCAGGAUUACGGUGCCGCCGCUGUCCUCGCCGCGACUCUGGUGACAGUGGACGUAGACAAUCUCGUCCACGU
((((.(((.(...((((..(((((((.((.((.((((((((((......)))))...))))))))).)))))))))))).)))....))))...(((((((.((.....))))))))).. ( -55.50)
>DroPse_CAF1 11912 120 - 1
CGCCCUCCGGGAAGUGGAUGGGCGGUCGCUGGACCCCGUCCUGGCCCACCAGGAUGACGGUGCCGCCGCUGUCCUCGCCCCGGCUCUGGUGGCAAUGCACGUACACGAUCUCGUCCACGU
.((((((((((..(.((((((((((.(((((.....((((((((....)))))))).)))))))))).).)))).)..)))))....)).))).....((((..(((....)))..)))) ( -55.20)
>DroSec_CAF1 2793 120 - 1
CGCCCUCGGGGAAGUGGAUCGGCGGCCGCUGGACGCCGUCCUGGCCCACCAGGAUUACGGUGCCGCCGCUGUCCUCGCCGCGACUCUGGUGACAGUGGACGUAGACAAUCUCGUCCACGU
((((.(((.((....(((.(((((((....((.(((((((((((....))))))...)))))))))))))))))...)).)))....))))...(((((((.((.....))))))))).. ( -60.90)
>DroPer_CAF1 11751 120 - 1
CGCCCUCCGGGAAGUGGAUGGGCGGUCGCUGCACCCCGUCCUGGCCCACCAGGAUGACGGUGCCGCCGCUGUCCUCGCCACGGCUCUGGUGGCAAUGCACGUACACGAUCUCGUCCACGU
.(((..(((((..((((..(((((((.((.(((((.((((((((....))))))))..))))).)).)))))))...))))..).)))).))).....((((..(((....)))..)))) ( -61.80)
>consensus
CGCCCUCCGGGAAGUGGAUGGGCGGCCGCUGGACCCCGUCCUGGCCCACCAGGAUGACGGUGCCGCCGCUGUCCUCGCCGCGACUCUGGUGACAAUGCACGUACACAAUCUCGUCCACGU
..((....))...((((((((((((.(((((.....((((((((....)))))))).))))))))))...((((((((((......))))))....))))...........))))))).. (-44.25 = -45.88 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:04 2006