Locus 8151

Sequence ID X_DroMel_CAF1
Location 20,272,755 – 20,272,872
Length 117
Max. P 0.765521
window13395

overview

Window 5

Location 20,272,755 – 20,272,872
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 91.03
Mean single sequence MFE -51.30
Consensus MFE -38.34
Energy contribution -40.90
Covariance contribution 2.56
Combinations/Pair 1.09
Mean z-score -2.17
Structure conservation index 0.75
SVM decision value 0.51
SVM RNA-class probability 0.765521
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20272755 117 + 22224390
GGAGCCUGAACACAAGCUCCGACGAGGCGGGCACUGGAUCCUUCAAGUCGAUCGCCUCGGCUAGUGUGGCCAAGGACUACGUGGAGUCACUGCAUCAGAACGCGAAGGCCACGCUGC
(((((.((....)).)))))..(((((((..((((.((....)).))).)..)))))))((.(((((((((.((((((......)))).))((........))...))))))))))) ( -51.80)
>DroPse_CAF1 11600 117 + 1
GGAGCCUGAACACCAGCUCGGAUGAGGCCAGCACCGGCUCCUUCAAGUCCAUGGCAACGGCGAGCGUGGCCAAGGACUACGUGGAGUCGCUGCAUCAGAACGCCAAGGCGACGCUGC
.((((.((.....))))))((......)).(((.(((((((....(((((.((((.(((.....))).)))).)))))....))))))).)))..(((..(((....)))...))). ( -48.90)
>DroSec_CAF1 2481 117 + 1
GGAGCCUGAACACAAGCUCCGACGAGGCGGGCACUGGAUCCUUCAAGUCGAUCGCCUCGGCCAGUGUGGCCAAGGACUACGUGGAGUCGCUGCAUCAGAACGCGAAGGCCACGCUGC
(((((.((....)).)))))..(((((((..((((.((....)).))).)..)))))))..((((((((((.((((((......)))).))((........))...)))))))))). ( -52.90)
>DroPer_CAF1 11439 117 + 1
GGAGCCUGAACACCAGCUCCGAUGAGGCCAGCACCGGCUCCUUCAAGUCCAUGGCAACGGCGAGCGUGGCCAAGGACUACGUGGAGUCGCUGCAUCAGAACGCCAAGGCGACGCUGC
(((((.((.....))))))).....(((..(((.(((((((....(((((.((((.(((.....))).)))).)))))....))))))).))).......(((....)))..))).. ( -51.60)
>consensus
GGAGCCUGAACACAAGCUCCGACGAGGCCAGCACCGGAUCCUUCAAGUCCAUCGCAACGGCGAGCGUGGCCAAGGACUACGUGGAGUCGCUGCAUCAGAACGCCAAGGCCACGCUGC
(((((.((....)).))))).....(((..(((.(((((((....(((((.((((((((.....)))))))).)))))....))))))).)))........((....))...))).. (-38.34 = -40.90 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:03 2006