Locus 8150

Sequence ID X_DroMel_CAF1
Location 20,272,309 – 20,272,411
Length 102
Max. P 0.540741
window13394

overview

Window 4

Location 20,272,309 – 20,272,411
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.72
Mean single sequence MFE -24.90
Consensus MFE -21.86
Energy contribution -21.94
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score 0.18
Structure conservation index 0.88
SVM decision value 0.01
SVM RNA-class probability 0.540741
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20272309 102 + 22224390
G------------------UCAUAUCUUCGCAUAGGUAUCUGUGGAUUCGGUUGGCUCUCUAUGAGAAGCGCCUGACCAAAAUCAUUGAGUAUCUGGUGAGCAAUGCCAGCAGCUUCUAU
.------------------..((((((......))))))..(((((..(.((((((.(((.((.(((.((...(((......)))....)).))).)))))....)))))).)..))))) ( -24.20)
>DroPse_CAF1 11242 84 + 1
------------------------------------UAUCUGUGGAUCCGCUUGGCCCUCUACGAGAAGCGUCUGACCAAGAUCAUCGAGUAUCUGGUGAGCAACGCCAGCAGCUUCUAC
------------------------------------....((((((.((....))...))))))((((((((((.....))))..........((((((.....))))))..)))))).. ( -22.70)
>DroSec_CAF1 2014 120 + 1
GAUUGACCAACUUGUUUUCUUAUGUCUCCGCAUAGGUAUCUGUGGAUUCGGUUGGCUCUCUACGAGAAGCGCCUGACCAAAAUCAUUGAGUAUCUGGUGAGCAAUGCCAGCAGCUUCUAC
..................(((((((....))))))).....(((((..(.((((((.(((.((.(((.((...(((......)))....)).))).)))))....)))))).)..))))) ( -28.90)
>DroSim_CAF1 2170 110 + 1
GAUUGACCAGCUUGUUUUCUUA----------UAGGUAUCUGUGGAUUCGGUUGGCUCUCUACGAGAAGCGCCUGACCAAAAUCAUUGAGUAUCUGGUGAGCAAUGCCAGCAGCUUCUAC
.........((((((......)----------)))))....(((((..(.((((((.(((.((.(((.((...(((......)))....)).))).)))))....)))))).)..))))) ( -27.50)
>DroPer_CAF1 11088 84 + 1
------------------------------------UAUCUGUGGAUCCGCUUGGCCCUCUACGAGAAGCGUCUGACCAAGAUCAUCGAGUAUCUGGUGAGCAAUGCCAGCAGCUUCUAC
------------------------------------....((((((.((....))...))))))(((((((.((.((((.((((.....).))))))).)))..((....)))))))).. ( -21.20)
>consensus
G__________________U_A__________UAGGUAUCUGUGGAUUCGGUUGGCUCUCUACGAGAAGCGCCUGACCAAAAUCAUUGAGUAUCUGGUGAGCAAUGCCAGCAGCUUCUAC
.........................................(((((..(.((((((.(((.((.(((.((...(((......)))....)).))).)))))....)))))).)..))))) (-21.86 = -21.94 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:02 2006