Locus 8149

Sequence ID X_DroMel_CAF1
Location 20,272,062 – 20,272,178
Length 116
Max. P 0.508271
window13393

overview

Window 3

Location 20,272,062 – 20,272,178
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.72
Mean single sequence MFE -48.48
Consensus MFE -37.20
Energy contribution -38.04
Covariance contribution 0.84
Combinations/Pair 1.08
Mean z-score -1.46
Structure conservation index 0.77
SVM decision value -0.05
SVM RNA-class probability 0.508271
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20272062 116 - 22224390
A---CAUCGAGUUGCUGCUGCUCUUCUUGAGCAUCGGCGGCCGCUGGAAACUGUCGCUGCUGCUGGAGGAGCGCUUG-CUGGGAUCGCUGGCCUCGAUCUCCUGCACCAGCUUGCUGAUG
.---((((.(((.((((..((.((((((.((((.(((((((....(....).))))))).)))).)))))).)).((-(.(((((((.......))))).)).))).))))..))))))) ( -52.00)
>DroPse_CAF1 11013 119 - 1
ACUGCAUCGAAUUGCUGCUGCUCUUCUUCAGCAUCGGGGGCCGCUGGAAGCUGUCGCUGCUGGAGGAUGAGCGCUUG-UUCGGGUCCAUCGCCUCGAUCUCCUGCACCAGCUUGCUGAUG
....(((((....((((..((((((((((((((.(((.(((........))).))).)))))))))).))))((..(-.((((((.....))).)))...)..))..))))....))))) ( -45.50)
>DroSec_CAF1 1767 116 - 1
A---CAUCGAGUUGCUGCUGCUCUUCUUGAGCAUCGGCGGCCGCUGGAAGCUGUCGCUGCUGCUGGAGGAGCGCUUG-CUGGGAUCGCUGGCCUCGAUUUCCUGAACCAGCUUGCUGAUG
.---((((((.((.(.((.((.((((((.((((.(((((((.((.....)).))))))).)))).)))))).))..)-).).))))(((((..(((......))).))))).....)))) ( -48.80)
>DroSim_CAF1 1923 116 - 1
A---CAUCGAGUUGCUGCUGCUCUUCUUGAGCAUCGGCGGCCGCUGGAAGCUGUCGCUGCUGCUGGAGGAGCGCUUG-CUGGGAUCGCUGGCCUCGAUUUCCUGAACCAGCUUGCUGAUG
.---((((((.((.(.((.((.((((((.((((.(((((((.((.....)).))))))).)))).)))))).))..)-).).))))(((((..(((......))).))))).....)))) ( -48.80)
>DroPer_CAF1 10846 120 - 1
ACUGCAUCGAAUUGCUGCUGCUCUUCUUCAGCAUCGGGGGCCGCUGGAAGCUGUCGCUGCUGGAGGAUGAGCGCUUGAUUCGGGUCCAUCGCCUCGAUCUCCUGCACCAGCUUGCUGAUG
....(((((....((((..((((((((((((((.(((.(((........))).))).)))))))))).))))((..((((.((((.....)))).))))....))..))))....))))) ( -47.30)
>consensus
A___CAUCGAGUUGCUGCUGCUCUUCUUGAGCAUCGGCGGCCGCUGGAAGCUGUCGCUGCUGCUGGAGGAGCGCUUG_CUGGGAUCGCUGGCCUCGAUCUCCUGCACCAGCUUGCUGAUG
....(((((....((((..((((((((.(((((.(((((((........))))))).)))).).))))))))........(((((((.......)))))))......))))....))))) (-37.20 = -38.04 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:01 2006