Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,270,328 – 20,270,430 |
Length | 102 |
Max. P | 0.873884 |
Location | 20,270,328 – 20,270,430 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.49 |
Mean single sequence MFE | -34.47 |
Consensus MFE | -24.19 |
Energy contribution | -24.63 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.01 |
Structure conservation index | 0.70 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20270328 102 - 22224390 GAGCGACAGCUAGUGGAUUGCCUGGUUGCCUGGCUGUCGGUGGCGUGGCCAGGAUAUAAGCGUUGACCAGGAACCACUGCGAACGCAGAUACACUCACAGAU ..(((...((.(((((....(((((((.((((((((.((....))))))))))...........)))))))..)))))))...)))................ ( -38.20) >DroSec_CAF1 600 83 - 1 GAGCGACGGCUAGUGU-------------------GUUGGUGGCGUGGCCAGGAUACGAACGCUGGCCAGGAACCACUGCGAACGCAGAUACACUCACAGAU .(((....)))(((((-------------------((((((..(.(((((((..........))))))).).))))((((....)))))))))))....... ( -32.70) >DroSim_CAF1 596 83 - 1 GAGCGACAGCUAGUGG-------------------GUUGGUGGCGUGGCCAGGAUACGAACGCUGGCCAGGAAGCACUGCGAACGCAGAUACACUCACAGAU .(((....))).((((-------------------((.(((..(.(((((((..........))))))).)..)).((((....))))...))))))).... ( -32.50) >consensus GAGCGACAGCUAGUGG___________________GUUGGUGGCGUGGCCAGGAUACGAACGCUGGCCAGGAACCACUGCGAACGCAGAUACACUCACAGAU .(((....)))((((.......................(((..(.(((((((..........))))))).).))).((((....))))...))))....... (-24.19 = -24.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:00 2006