| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,269,681 – 20,269,781 |
| Length | 100 |
| Max. P | 0.882846 |
| Location | 20,269,681 – 20,269,781 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 65.25 |
| Mean single sequence MFE | -32.47 |
| Consensus MFE | -19.02 |
| Energy contribution | -18.80 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20269681 100 + 22224390 -UCAAGGACGUGGCAUGGCGACAACGCGGUCGGCGUUCCAGACGGCGAGCACUUUGUUGUCGCCACAGAGCAACAGUGCCACACAGUUCACAGC-------UGCCCCG -....((..(((((((((((((((((.(.(((.((((...)))).))).)....))))))))))...(.....).))))))).((((.....))-------))..)). ( -40.00) >DroPse_CAF1 9546 96 + 1 GGCAAGGACAUGGCCUGGCGACAACUCGGUCGGCGUCCCAGACAUC-AGCAGAGUGUCGCCGCCACCAGUACACCAUUCCACC-----------CCCCGCCCCCCCCC (((..((...((((..(((((((.(((.((.(..(((...)))..)-.)).))))))))))))))...(....).........-----------))..)))....... ( -28.90) >DroPer_CAF1 9516 79 + 1 GGCAAGGACAUGGCCUGGCGACAACUCGGUCGGCGUCCCAGACAUC-AGCAGAGUGUCGCCGCCACCAAUACACCAUUCC---------------------------- (((.(((......)))(((((((.(((.((.(..(((...)))..)-.)).)))))))))))))................---------------------------- ( -28.50) >consensus GGCAAGGACAUGGCCUGGCGACAACUCGGUCGGCGUCCCAGACAUC_AGCAGAGUGUCGCCGCCACCAAUACACCAUUCCAC_____________________CCCC_ ..........((((..(((((((.(((.(((((....)).)))........))))))))))))))........................................... (-19.02 = -18.80 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:59 2006