Locus 8146

Sequence ID X_DroMel_CAF1
Location 20,266,551 – 20,266,641
Length 90
Max. P 0.749369
window13390

overview

Window 0

Location 20,266,551 – 20,266,641
Length 90
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 82.79
Mean single sequence MFE -23.98
Consensus MFE -14.36
Energy contribution -15.17
Covariance contribution 0.81
Combinations/Pair 1.08
Mean z-score -2.19
Structure conservation index 0.60
SVM decision value 0.47
SVM RNA-class probability 0.749369
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20266551 90 - 22224390
AUAAAUGUGUACACGUAUCUGUGGCCCUG-----UGGAC-GGGGCAGAAACUA---CUAUGCGACAUUAAUUACAGACUAAUGUAUCGUGCAUAUUGUA
...(((((((((.(((((..((.((((((-----....)-)))))....))..---..)))))((((((.........))))))...)))))))))... ( -28.20)
>DroSec_CAF1 15602 89 - 1
AUAAAUGUGUACACGUAUCUUUGGCCCUG-----CGGAC-GGGGCAGAAACUACUACUAUGCGACAUUAAUUACAGUCUAAUGUAUCGUGCAUAU----
....((((((((..(((..(((.((((((-----....)-))))).)))..))).........((((((.........))))))...))))))))---- ( -23.60)
>DroEre_CAF1 12861 82 - 1
AUAAAUGAGUACACGUAUCUGCGGACCUG-----CGGACGGGCGCAGAAACUA--------CGACAUUAAUUACAGACUAAUGUAUCGUACAUAU----
........((((.((((((((((..((((-----....))))))))))...))--------))((((((.........))))))...))))....---- ( -22.50)
>DroYak_CAF1 13446 87 - 1
AUAAAUGUGUACACGUAUCCGUGGACCUGGGCUUCUGAAGGGGGCAGAAACUA--------CGACAUUAAUUACAGACUAAUGUAUCGUACAUAU----
....((((((((.......(((((......(((((.....))))).....)))--------))((((((.........))))))...))))))))---- ( -21.60)
>consensus
AUAAAUGUGUACACGUAUCUGUGGACCUG_____CGGAC_GGGGCAGAAACUA________CGACAUUAAUUACAGACUAAUGUAUCGUACAUAU____
....((((((((..((.(((((..(((.............)))))))).))............((((((.........))))))...)))))))).... (-14.36 = -15.17 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:58 2006