Locus 8140

Sequence ID X_DroMel_CAF1
Location 20,249,697 – 20,249,804
Length 107
Max. P 0.552316
window13377

overview

Window 7

Location 20,249,697 – 20,249,804
Length 107
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 91.47
Mean single sequence MFE -19.75
Consensus MFE -16.30
Energy contribution -16.34
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.32
Structure conservation index 0.83
SVM decision value 0.04
SVM RNA-class probability 0.552316
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20249697 107 - 22224390
ACCAAAUGGGAAAUUACUUAUUUGC--------CUUCGUGCGGUUAUUGAUAAUCCCAGGACCUCCCCUAACGACCGACAUGACACUUCCACUCCCACUUUGUAUUUCCCCAAAG
..((((((((......)))))))).--------..(((((((((..((.........(((......)))))..)))).)))))..............(((((........))))) ( -18.80)
>DroSec_CAF1 4518 115 - 1
ACCAAAUGGGAAAUUACUUAUUUGCGUUAUUUGCUUCGUGCGGUUAUGGAUAAUCCCAGGACCUCCCCUAACGACCGACAUGACACUUCCACUCCCACUUUGUAUUUCCCCACAG
..(((((((((............(((.....))).((((((((((..((......))(((......)))...))))).))))).........))))).))))............. ( -25.80)
>DroSim_CAF1 6344 107 - 1
ACCAAAUGGGAAAUUACUUAUUUGC--------CUUCGUGCGGUUAUUGAUAAUCCCAGGACCUCCCCUAACGACCGACAUGACACUUCCACUCCCACUCUGUAUUUCCCCACAG
.......(((((((...........--------..(((((((((..((.........(((......)))))..)))).))))).......((.........)))))))))..... ( -18.10)
>DroEre_CAF1 4546 106 - 1
ACCAAAUGGGAAAUUACAUAUUUGC--------CUUCGUGCGGUUAUUGAUAAUCCCAGGACCUCUCCUAACGACCGACAUGGCACUCCCACUCCCACUUCU-CUUUCCCCACAG
......(((((...........(((--------(...(((((((..((.........((((....))))))..)))).))))))).......))))).....-............ ( -18.77)
>DroYak_CAF1 7678 107 - 1
ACCAAAUGGGAAAUUACAUAUUUAC--------CUUCGUGCGGUUAUUGUUAAUCCCAGGACCUCUCCUAACGACCGACAUGACACUUCCACUCCCACUUUUUACUUCCCCACAG
......((((((((.....))))..--------..(((((((((..((.........((((....))))))..)))).))))).........................))))... ( -17.30)
>consensus
ACCAAAUGGGAAAUUACUUAUUUGC________CUUCGUGCGGUUAUUGAUAAUCCCAGGACCUCCCCUAACGACCGACAUGACACUUCCACUCCCACUUUGUAUUUCCCCACAG
......((((((((.....))))............(((((((((..((.........(((......)))))..)))).))))).........................))))... (-16.30 = -16.34 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:47 2006